Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq346 114 1e-20 >seq346 Length=17871 Score = 114 bits (126), Expect = 1e-20 Identities = 460/709 (65%), Gaps = 24/709 (3%) Strand=Plus/Minus Query 138234 GTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCT 138293 || || |||||||||| |||||| | ||| |||||| | ||| || || || Sbjct 4767 GTTTTGTGTAAATTTAAATGACAGATATCAGCACCAATTTTTGCTGGATTGCATAATCCG 4708 Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 | |||||||| | ||||| || || | |||||| || |||||| |||||||| || Sbjct 4707 ATTTGTGCATTCATGTTTGCTCCGTCAAAATATACTTGTCCACCAAAATCATGAACAATT 4648 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT- 138412 || || | | | || | | || || |||||||| || |||||||||| ||| Sbjct 4647 TTTAATGCTTCTATAATATGAGGCTCGAAAACACCATGTGTACTAGGATATGTAACCATG 4588 Query 138413 AATACATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTAT 138472 || ||| | || | | | ||| | |||||||| | | ||||| | | | || Sbjct 4587 AAAACA-GCTAGATTATTTTTATGTAAATTTGCTTTCATTTTAAGATCATCTAATTGAAT 4529 Query 138473 GTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGC 138532 || |||| ||||| || | | | |||||||||||| ||||| | ||| ||| Sbjct 4528 ATTTCCATTTGAGTCACATTTTATAGGGATAACTTTCATTCCAGCCATCGCAGCAGAAGC 4469 Query 138533 AGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGA 138592 |||||| || ||||| || || ||| || ||||||| ||| | | | | | Sbjct 4468 AGGATTTGTACCATGAGCAGATATTGGAATAAGACATATATTACGATGACTTTGTTTATT 4409 Query 138593 TCCTTGATGATATGCTTGGATTGCTAA----CAGTCCTGCATACTCACCCTGTGATCCTG 138648 | ||| ||||||| || ||| ||| || |||| ||| || || || ||| | Sbjct 4408 TTCTTTATGATAT--TTAGAT--ATAATTTGAAGCCCTGTATATTCTCCACTTGCTCCAG 4353 Query 138649 CGTTAGGTTGTAATG-ATATAGAATCAAAACCTGTGAT--ATCACATAACCATTTCTGTA 138705 || ||||| |||| | || | |||||| ||||| || || | | || ||||| | || Sbjct 4352 AATTTGGTTGAAATGTACAT-GCATCAAATCCTGTAATTAATAATA-AATCATTT-TCTA 4296 Query 138706 AGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCA-TAGGTGTATGTGGATGCA-- 138762 | || | || | | | ||||| || ||| || |||| | ||| | |||||| | Sbjct 4295 ATTCTTTAATAAGCATATGATAGCCTTTGG-CTTGATCACTTGGTACAAATGGATGAAGA 4237 Query 138763 -CGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATT 138821 ||| ||||| ||||| | | || || ||| | | ||||| |||||||| Sbjct 4236 GAATTG---AATTCAGGCCATGTAATACCCAACATTTCAGTGGTCGCATTCAGTTTCATA 4180 Query 138822 GTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCA 138881 || || || ||||| || | ||| || |||||| || | |||||||| | | | Sbjct 4179 GTACAGCTTCCAAGAGGTATCATGGAATATACTAAAGATATGTCTTTAGATTGGAGATGA 4120 Query 138882 TAGATATATCTCATCATGTCAGTTTCACTGTGATACTTATTGAATACTT 138930 | ||||||| | || || ||||| | ||||| ||| || |||| Sbjct 4119 TGTATATATCGAAGTATTTCTGTTTCGGTATGATATGAATTAAAGACTT 4071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995808982160