Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq195 91.5 2e-13 >seq195 Length=28285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 234/357 (66%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || ||||| || ||||||| ||||| || | || | ||||||||| || ||| Sbjct 13836 TGGTATGCAATTCTGGAAGCACAGACAGAGACAGGTAATCCTTTTATGCTTTATAAAGAT 13777 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || || || || || |||||| | || || ||||| | || ||| | ||| Sbjct 13776 GCATGCAATCGTAAATCGAATCAGAAGAATCTTGGGACTATCAAATGTTCTAATTTATGC 13717 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 || ||||| | ||||| || | ||||| |||||||||||| | ||| || Sbjct 13716 ACTGAAATAATCGAGTATTCATCTCCAGATGAAGTAGCTGTTTGCAATCTTGCAAGTATT 13657 Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAA 76117 || | |||| | | | | ||| ||| || ||||| | |||| || ||||| Sbjct 13656 GCTTTACCAACTTTTATTGACAAAG------GCATTTATGATTTTCAAAAGCTACATGAT 13603 Query 76118 ATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTT 76177 | ||||| |||| | | |||| |||| | ||||| |||| |||||| || Sbjct 13602 GTTACAAAAGTTGTAGCTAGAAATTTAAATAAGATTATTGATGTTAATTATTATCCTGTG 13543 Query 76178 GAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGT 76234 || || | | ||| |||| |||| | || ||||| | |||||||||||| Sbjct 13542 GAAGAAGCTAGGAGGTCAAATAAAAGACATCGCCCGATTGGCATTGGTGTTCAAGGT 13486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566930351040