Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq103 688 0.0 seq132 185 1e-41 seq220 138 1e-27 seq195 134 2e-26 seq78 118 1e-21 seq189 111 2e-19 >seq103 Length=78968 Score = 688 bits (762), Expect = 0.0 Identities = 1098/1565 (70%), Gaps = 17/1565 (1%) Strand=Plus/Minus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 ||||||| ||||||||||| || | ||||| || || |||||| | | | ||||| Sbjct 75382 TTGGTATTGATTTAGGAACCACGTTTTCATGCGTGGGAGTATGGATATCAGGACATGTAG 75323 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 ||||||| ||||||| ||||| || || || || ||||| || || || ||||||||| Sbjct 75322 AGATTATAGCGAATGATCAAGGGAATCGAACCACACCATCATATGTAGCGTTTACAGATT 75263 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 ||| | || |||||||||| |||||||| ||| || ||||| || |||||| | Sbjct 75262 CAGAAAGACTTATTGGAGATGCAGCAAAAAACCAGGTTGCAATGAATCCATGCAATACAG 75203 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 | ||||| || || ||||| ||||| || || || |||| |||| ||| |||| Sbjct 75202 TATTTGATGCAAAACGTCTGATTGGACGGAAATTCGGGGATCCAGAAGTGCAATCAGATA 75143 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | || | ||| ||| | ||||| | | | | | |||||| ||| | |||| Sbjct 75142 TGAAACATTGGCCTTTTAAAGTTATAGACAAAGG---TCAGAAGCCTTATATTCAGGTTG 75086 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 ||| | | || || | ||| |||| | || || || ||||| || ||||| | | | Sbjct 75085 AATATAAAGGGGATATTAAAACATTTACGCCGGAGGAGATTTCATCAATGGTCCTTACAA 75026 Query 195663 AGATGAAGGAGACTGCGGAATCTT-TCATGGGTA-AAACTGTGAAAGATGCAGTTGTGAC 195720 | |||||||| || ||| | | || |||| ||| | | || ||| ||| | || Sbjct 75025 AAATGAAGGAAGTGGCAGAAGCGTATCTTGGGACTAAAGTTTCCAA--TGCTGTTATCAC 74968 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || || || || |||| ||||||||| |||||||| || || ||||| | ||||| Sbjct 74967 GGTCCCAGCATATTTCAATGATTCACAGCGACAGGCTACGAAAGACGCAGGATTGATTGC 74908 Query 195781 GGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839 || | || ||| ||| | |||||||||||||| ||||| || || ||||| ||||||| Sbjct 74907 AGGATTGAA-TGTTTTACGTATTATCAATGAACCTACAGCAGCAGCCATTGCATATGGTC 74849 Query 195840 TGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 | || ||||| | | || || ||||| | || |||||||| || || || || | Sbjct 74848 TAGATAAGAAGACATCAAATGAAAAGAATGTGCTTATTTTTGATCTTGGAGGAGGAACTT 74789 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 |||| || || | | | ||| |||| || || || ||||| || || || || || | Sbjct 74788 TTGACGTATCGTTATTAACTATCGAAGAAGGAATTTTTGAAGTCAAAGCAACCGCAGGCG 74729 Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGT 196019 |||| ||| | || || |||||||| || |||||| | || || || ||| | Sbjct 74728 ATACCCATTTGGGAGGAGAAGATTTTGACAATCGTCTTGTAAACCACTTCATTGCTGAAT 74669 Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079 | || || | ||||||||| |||| || ||| | | |||||||||||||| | | Sbjct 74668 TTAAACGCAAACACAAGAAAGATCTTTCAGGGAATGCACGATCTCTTCGTCGGCTTCGAA 74609 Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTG 196139 | |||||||| ||||| ||||| ||||| || || | | || || | | || |||| Sbjct 74608 CAGCATGTGAGCGTGCTAAACGGACTCTTTCATCATCAACACAGACGAGTATAGAAATTG 74549 Query 196140 ATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGT 196199 |||| || ||||| |||||||| || ||||| ||||||| ||||| || |||||||| Sbjct 74548 ATTCCTTATTTGAAGGAATTGATTTATATACTTCTATTACTCGTGCTCGATTTGAAGAAC 74489 Query 196200 TAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAA 196259 | ||| | |||||| |||||||| ||||| |||| |||||||| | | Sbjct 74488 TTTGTCAAGATCTTTTTAGGGGAACAATGGAACCAGTTGAGAAAGTTCTTCGTGATTCTA 74429 Query 196260 AGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGA 196319 | || ||||| || | ||| |||||||||| | || || || || || ||||||||| Sbjct 74428 AAATTGATAAATCAAGTGTTCATGAAATTGTATTGGTTGGTGGTTCTACGCGTATTCCGC 74369 Query 196320 AGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACC 196379 ||||| | || ||| | || || ||| ||||| ||| | ||||||||| | Sbjct 74368 GTATTCAGAAATTGGTTTGTGATTTTTTTAATGGAAAAGAGCCAAATAGAACGATCAATC 74309 Query 196380 CGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACA 196439 | |||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| | ||| Sbjct 74308 CAGATGAAGCTGTTGCCTATGGTGCGGCAGTTCAAGCTGCTATTCTTTCAGGAG---ACA 74252 Query 196440 -AT---AATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTT 196495 || || || || |||| | || | |||||||| || || | || ||||| || Sbjct 74251 CATCGGAACAAACTC-AAGACATACTCTTGCTTGATGTGGCGCCTCTCTCAATGGGTATT 74193 Query 196496 GAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAG 196555 ||||| || || ||||| ||||| | | ||||| | |||| |||||| | |||||||| Sbjct 74192 GAAACTGCAGGCGGTGTGATGACAACACTTATTAAACGGAATACAACTGTCCCGACTAAA 74133 Query 196556 AAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATAT 196615 ||| |||||||||| || ||| | ||||| || || ||||| | ||| ||||||||| Sbjct 74132 AAGTCCGAAGTCTTTTCTACTTATGCAGATAACCAGCCTGGTGTACTTATCCAAGTATAT 74073 Query 196616 GAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGG 196675 ||||| ||||| | ||| | || ||| ||| |||||||| || ||||| || || Sbjct 74072 GAAGGCGAACGTGCACGTACCAAAGATTGCCACTTACTTGGACAATTTGATTTAACAGGC 74013 Query 196676 ATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAAT 196735 |||||| ||||||| | |||||||| || ||| | ||| || || || || || ||| Sbjct 74012 ATTCCACCTGCACCTCGTGGTGTTCCTCAAATTGAAGTTACTTTTGACATTGATGCTAAT 73953 Query 196736 GGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATT 196795 |||||| || ||| | |||| || || | | || ||| | || ||| || Sbjct 73952 TCAATTCTTAATGTCTCTGCTGTTGAGAAAGGGACAGGTAAAACAAGCAATATTACTATC 73893 Query 196796 ACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAA 196855 | ||||| || || || | || ||||| |||||||| |||||| ||||||| || || Sbjct 73892 AAGAATGAAAAAGGTCGTTTATCAAAGGAAGAAATTGAGCGTATGATTCAAGAAGCAGAG 73833 Query 196856 AAGTA 196860 || || Sbjct 73832 AAATA 73828 >seq132 Length=47203 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 |||||||| ||||| |||||||| || || | ||||| ||||||||||||||||| || Sbjct 38830 GTGAAAACACTTACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCAGACACAATTGAC 38771 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || ||||| ||||||||||||||| ||||| |||||||| ||||| ||||| || || Sbjct 38770 AATGTCAAAAGCAAGATTCAAGATAAAGAAGGGATTCCACCGGATCAACAACGGCTAATC 38711 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 |||||||| || ||| | || |||||| | || || |||||||||| | || || || Sbjct 38710 TTTGCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGAAAGAA 38651 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || ||||| |||||||| | |||| || ||||| Sbjct 38650 TCGACTCTTCACCTTGTATTGCGGCTCCGTGGTGG 38616 >seq220 Length=17533 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || ||||| || || |||||||| || || || || || || || ||||| |||||||| Sbjct 2100 GTAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGAC 2159 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || | ||| ||| |||||||| ||||| ||||||||||| || || || || | ||| Sbjct 2160 AATGTTAAAAGCAAAATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATT 2219 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 ||||| || || ||||| ||||| || || || || |||| ||||| | || || || Sbjct 2220 TTTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGAA 2279 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || || ||||| || | ||||| || ||| Sbjct 2280 TCGACCCTTCATCTTGTATTACGCCTTCGTGGCGGT 2315 >seq195 Length=28285 Score = 134 bits (148), Expect = 2e-26 Identities = 413/632 (65%), Gaps = 15/632 (2%) Strand=Plus/Minus Query 77855 ATTATAAAGGAACGTGACTTTGAATTTGGGTATTTTGGATTGAAGACTCTCGAAAAAAGT 77914 ||||| | || ||||| ||| || | ||||||||||| || || | || |||| Sbjct 14648 ATTATCTACGATCGTGATTTTACATATAACTATTTTGGATTTAAAACATTAGAGCGAAGT 14589 Query 77915 TACCTGCAGTACATGGATGGAAAGCTCATGGAGACACCTCAATACTTATTCATGCGTGTT 77974 || || | || |||||||| | || | ||| ||| | | | ||||||||| Sbjct 14588 TATCTTCTTCGTATTAATGGAAAGGTTGCAGAAAGACCCCAACATATGATAATGCGTGTT 14529 Query 77975 TCTATTGGTATTCATGGAAATGATATTCCAGCGGTACTTGAAACGTATGATAAAATGTC- 78033 | ||||||| ||||| ||||| || | | ||||||| ||| || ||||| Sbjct 14528 GCAGTTGGTATCCATGGTGATGATGTTGAAAAAGCTATTGAAACATATAATCTTATGTCT 14469 Query 78034 -CAATGGTATGTTTATTCACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCAC 78092 ||| ||| | | || || ||||||| || ||||||||||| ||||| ||| | Sbjct 14468 GCAAAA-TATATG-ACACATGCTTCACCTACATTATTTAATGCAGGAACTCCAAATCCTC 14411 Query 78093 AGATGTCATCTTGTTTCCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGA 78152 | | || || || |||||| | | | || || || || ||| | || || || | | Sbjct 14410 AACTTTCGTCCTGCTTCCTAGTAACTATGAAAGATGATTCCATTGAAGGAATTTATGATA 14351 Query 78153 CTCTCACAGAGTGTGCTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACG 78212 | || | | ||||| |||| ||| || || || || || || || |||| Sbjct 14350 CACTTAAAACATGTGCCATGATTAGTAAAACAGCAGGAGGAATTGGGCTCAATGTTCATT 14291 Query 78213 ATGTTCGTGCAAACAAGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTC 78272 | ||||||| | | ||| |||||||||||| ||| |||| ||||||| Sbjct 14290 GTATTCGTGCTACTGGGAGTTATATTGCGGGAACTAATGGTACATCTAATGGTATTATTC 14231 Query 78273 CTATGCTTAGGGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG- 78331 ||||||| ||||||||||| ||| || || ||||| ||||| ||| | | ||| Sbjct 14230 CTATGCTCAGGGTATTCAACAATACTGCTCGATATGTTGACCAA---GGTGGGAACAAGC 14174 Query 78332 -----GGGTCATTCGCTATGTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGG 78386 || | || ||||| || | ||||| ||||| || ||| || | || || |||| Sbjct 14173 GTCCTGGCGCCTTTGCTATTTATATAGAACCATGGCATGCAGATATATTTGAATTCTTGG 14114 Query 78387 AACTTCGTCTCAACCAGGGTGACGAGGAAGCTCGATGCAGGGAT-TTATTCACTGCTATG 78445 | |||||| || || ||| | || ||| |||| || ||| || || | ||| | Sbjct 14113 ATCTTCGTAAAAATCACGGTAAAGAAGAAATTCGAGCAAGAGATCTTTTTTATGGCT-TA 14055 Query 78446 TGGATTCCGGATCTTTTTATGAAGAGAGTTGA 78477 ||||| || || | |||||||| |||| || Sbjct 14054 TGGATACCTGACTTATTTATGAAACGAGTGGA 14023 Score = 96.9 bits (106), Expect = 5e-15 Identities = 239/363 (66%), Gaps = 10/363 (3%) Strand=Plus/Minus Query 78612 AACTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCGTATATGCTATACA 78671 |||||||| | || ||| | || || |||||||| || | || | |||||| || | Sbjct 13841 AACTATGGTATGCAATTCTGGAAGCACAGACAGAGACAGGTAATCCTTTTATGCTTTATA 13782 Query 78672 AAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACC 78731 |||| || || | || || || || ||||| || || |||||| | ||||| Sbjct 13781 AAGATGCATGCAATCGTAAATCGAATCAGAAGAATCTTGGGACTATCAAATGTTCTAATT 13722 Query 78732 TTTGCACAGAAATTCTGGAATACACGGATAAGAATGAAACAGCTGTATGTAATCTAGGGT 78791 | ||||| ||||| | || || | | ||||| |||||| || ||||| | Sbjct 13721 TATGCACTGAAATAATCGAGTATTCATCTCCAGATGAAGTAGCTGTTTGCAATCTTGCAA 13662 Query 78792 CTATCGCTCTACCAAAGTTTGTTGATCGAGAATTAAAGACATTT--GATTATTCAAAGCT 78849 ||| ||| |||||| ||| |||| |||| ||||| |||| | |||||| Sbjct 13661 GTATTGCTTTACCAACTTTTATTGAC--------AAAGGCATTTATGATTTTCAAAAGCT 13610 Query 78850 CCACGAAATTACAAAAATCGTAACTAAAAATTTAAATCGTGTAATTGACCGTAACTACTA 78909 || || |||||||| | ||| ||| |||||||||| | ||||| ||| || || Sbjct 13609 ACATGATGTTACAAAAGTTGTAGCTAGAAATTTAAATAAGATTATTGATGTTAATTATTA 13550 Query 78910 CCCAGTCGAGACTGCTAAATATTCTAATATGAAACATAGACCAATTGGTCTAGGTGTTCA 78969 || || || |||| || |||| | |||| | || ||||| | |||||||| Sbjct 13549 TCCTGTGGAAGAAGCTAGGAGGTCAAATAAAAGACATCGCCCGATTGGCATTGGTGTTCA 13490 Query 78970 AGG 78972 ||| Sbjct 13489 AGG 13487 >seq78 Length=127363 Score = 118 bits (130), Expect = 1e-21 Identities = 312/466 (67%), Gaps = 13/466 (3%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGT-ATGGCAAAATGATCGTGT 195360 |||||||| ||||| || || ||||| |||||||||||||| ||| | || || || Sbjct 120468 ATTGGTATTGATTTGGGGACGACTTATTCATGTGTTGGTGTTATGTTGTCAGGA-CGAGT 120410 Query 195361 AGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGA 195420 || ||| | | || || || || || |||| ||| || || || ||||||||||| || Sbjct 120409 TGAAATTTTGGCAAACGATCAGGGCAATCGTATAACGCCGTCATATGTTGCCTTTACTGA 120350 Query 195421 TAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATAC 195480 | | || || | ||||| ||||| || ||||| || | | | || || || || Sbjct 120349 TGAAGAGCGGTTGGTTGGGGATGCTGCGAAAAACCAAGCTCCGACAAATCCACAAAACAC 120290 Query 195481 TGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAA---GTCCAAGA 195537 ||| ||||| | ||||| || ||||| | | ||| ||| || || || || | Sbjct 120289 TGTTTTTGATGTCAAGCGGCTGATTGGCAGGAGATTT---GATGAGGAAGACGTTCAGGC 120233 Query 195538 CGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCC-TATGATTA 195596 ||||| ||| | ||| | | | ||| | ||| | || | || ||||| ||| || Sbjct 120232 GGATATGAAGCATTGGCCAT-TCAAGGT-TTCGCATCGT-GATGGGAAGCCGCATG-TTG 120177 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | ||| | || || || |||| ||| | || ||||||||||| |||||||| Sbjct 120176 AAGTTAATATTGCTGGAGAAAAGAGGATGTTTACACCGGAAGAAATTTCTGCTATGGTGC 120117 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||| ||||| || | || ||| | | | ||| || || | |||| || | Sbjct 120116 TTCGTAAAATGAAAGAAATAGCTGAAGCATATCTTGGTCGGACGGTTACCCATGCGGTAG 120057 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAA 195762 | || ||||| ||||| |||| |||| | ||||| || || || || Sbjct 120056 TTACAGTACCCGCTTATTTCAATGATGCGCAACGTCAAGCAACCAA 120011 Score = 104 bits (114), Expect = 3e-17 Identities = 674/1071 (63%), Gaps = 27/1071 (3%) Strand=Plus/Minus Query 195798 GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACG 195857 ||||| | ||||| ||||| || || |||||||| |||||| |||| ||||| | | | Sbjct 119839 GAATTGTGAATGAGCCAACTGCTGCCGCAATTGCCTATGGTTTGGATAAGAAAGATGGTG 119780 Query 195858 AAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCA 195917 || || || ||| | ||| || | |||||||| || |||||||| || | || Sbjct 119779 AACG-AATGAT-TATCG-TCTACGACTTAGGTGGTGGGACATTTGATGTATCGTTACTGT 119723 Query 195918 ATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTG 195977 ||||| | ||| | || || || | || || || |||||||||||| ||||||||| Sbjct 119722 CGATTGAGGATGGCGTCTTTGAGGTTATTGCAACAGCGGGTGATACTCATTTAGGTGGTG 119663 Query 195978 AAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGA 196037 ||||||| ||| | | | | |||| || || |||| | |||| | Sbjct 119662 AAGATTTTGATCACCAAGTGATGCAATATTTTAAGAATATATTTCGTC--AGAAATATGG 119605 Query 196038 AAGATATTT--CTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGC 196095 | | || || |||||||||| | || ||| || || | |||| || Sbjct 119604 CGGGAACTTAGATGATGATCCTAGGGCCTTGGGTAAGCTAAGACGTGAAGTTGAAAAGGC 119545 Query 196096 CAAACGAACTCTCTCTTCTACGGCTCAAACAATG-GTTGAGATTGATTCGTTGTTTGACG 196154 || || || | || || | | | | | |||| ||||| ||| | | ||| Sbjct 119544 AAAGCGTACATTGTCATC-GCAGTTGTCTGTACGTCTTGATATTGAATCGCTTTACAACG 119486 Query 196155 GAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGT 196214 | || || |||| | ||| | || ||||| ||||| || | ||| | | | Sbjct 119485 GCATAGATTTCTCTGAAACATTGACTCGTGCTAAGTTTGAGGAACTCAACATGCACCTTT 119426 Query 196215 TTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTA 196274 ||| || ||| | || || || ||||| ||| || | ||| | | || ||| Sbjct 119425 TTAAAAAAACAATGAAGCCGGTAGAGCAAGTTCTTAAGGATGGAAATGTTAAGAAATCTG 119366 Query 196275 AGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGC 196334 | ||||||| ||||| | || || |||||||| || || || || | ||||| | Sbjct 119365 ACATTGATGACATTGTTTTAGTCGGCGGATCAACACGAATCCCTAAAGTACAACA-ACTA 119307 Query 196335 TTTCTAGCTTCTTCAATAAT--AAAGATTTAAACAAAACG-ATCAACCCGGATGAAGCAG 196391 || || | || | || ||||| | ||| | || || || |||||||||| Sbjct 119306 TTGGAGGCATATT--TTGATGGAAAGAAAGTCTCTAAAGGTATTAATCCAGATGAAGCAG 119249 Query 196392 TTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCC 196451 | || |||||||| | || |||| || |||| | || | | | || || Sbjct 119248 TAGCGTATGGTGCTACTGTGCAGGGTGGTATTTTATC------TCATCAAGATGGTGTTG 119195 Query 196452 AAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTG 196511 | ||| || | || | ||||| || | | | || |||| ||| | ||||| | Sbjct 119194 AGGATATTGTCTTAGTCGATGTAAATCCATTGACTTTAGGAATTGAGACAACTGGTGGCG 119135 Query 196512 TTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTT 196571 | ||||||||| | ||| | || ||| |||||||| || ||| |||||| Sbjct 119134 TAATGACTAAACTAATTTCACGCAATACAGTAATTCCGACACGTAAATCACAGATCTTTT 119075 Query 196572 CAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCC 196631 | || || ||||||||| ||| |||||||| | ||| || || ||||| | Sbjct 119074 CCACTGCATCTGATAATCAAGATACCGTTTTGATTCAAGTGTTTGAGGGCGAGCGCTCTC 119015 Query 196632 GTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGAT---TCCAGCTGCAC 196688 | |||| ||||| | | | || | || || || || || || ||||||| ||| Sbjct 119014 TTACAAAAGATAATAACATGTTGGGCAAATTTGAGTTAACAGGAATACCTCCAGCTCCAC 118955 Query 196689 CCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACG 196748 | ||||| || |||||| | || || || | || || ||||| | ||| | Sbjct 118954 ---GTGGTGTGCCTCAGATTGAAGTGACGTTTGAGCTTGATGCCAATGGGGTATTAACAG 118898 Query 196749 TCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGG 196808 | | || || || | | ||| ||||| ||| ||| || | ||||| |||| Sbjct 118897 TGTCTGCAACAGATAAAGGTGGTGGTAAATCAGAATCAATTACTATCAAGAATGATAAGG 118838 Query 196809 GGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | ||||| || | ||||||||||| |||||| |||| ||||| || |||| Sbjct 118837 GTCGGCTGTCGCAAGAGGAAATTGAGCGTATGATTCAGGATGCAGAGAAGT 118787 >seq189 Length=26291 Score = 111 bits (122), Expect = 2e-19 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 195702 TGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAA 195761 ||||| | |||||| | || ||||| || || || |||| || || | | |||| Sbjct 6173 TGAAAAA-GCAGTTATTACAGTACCAGCATATTTTTCTGATAGTCAGCGTCTTTCAACAA 6231 Query 195762 AGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGG 195821 |||| || | ||||||| ||| ||||| ||| | ||||||||||| || || |||| Sbjct 6232 AGGATGCAGGCACTATTGCCGGTTTAAACGTTCTCCGTATTATCAATGAGCCTACTGCGG 6291 Query 195822 CTGCAATTGCTTATGGTCTGGA--CAAGAACAAGGACGAAGATAAAAATGTATTGATCTT 195879 | |||||||| |||||||| || ||| | | || |||| |||||||| | || || Sbjct 6292 CAGCAATTGCATATGGTCTTGATTCAAAATC--TGATAAAGAAAAAAATGTTCTTATTTT 6349 Query 195880 TGATCTCGGTGGTGGTACGTTTGATGTCTCA 195910 |||| | || || ||||| |||||||| ||| Sbjct 6350 TGATTTGGGGGGCGGTACATTTGATGTATCA 6380 Score = 105 bits (116), Expect = 9e-18 Identities = 246/369 (67%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 196053 ATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTT 196112 ||||| | ||| | || || | || |||||||| |||||||| || |||| | || Sbjct 6618 ATCCTCGTGCTTTACGGCGTTTAAGAACTGCATGCGAACGTGCTAAGAGAACATTATCCA 6677 Query 196113 CTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAA 196172 | | ||||| | ||||| ||||| || || || || || | || | Sbjct 6678 GTGTTACACAAACTACAGTTGAAATTGAGTCATTAAAAGATGGTCAAGATCTTAGTATTA 6737 Query 196173 CTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTT--AGGAAGTGTATGGA 196230 ||||| |||||||||||||||||| | || || | | ||| | || | | || Sbjct 6738 ATATTAATCGTGCACGTTTTGAAGAGATTAATTCAAAAGTCTTTCAATCAA--CTCTTGA 6795 Query 196231 ACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGT 196290 ||||||||| |||| ||| || |||| || ||||| ||||| ||||||| ||||| Sbjct 6796 GCCTGTTGAAAAAGTTCTTAAAGATTCAAAAATAGATAAATCTAAAATTGATGATATTGT 6855 Query 196291 CCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAA 196350 | || || |||||||| |||||||| |||||| | | ||||| || || | Sbjct 6856 TTTGGTTGGTGGATCAACTCGTATTCCACGTATTCAAAAACTCGTTTCTGATTTTTTTGA 6915 Query 196351 TAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGT 196410 ||| | | || ||| | ||||| || || ||| ||||| |||||||| || || Sbjct 6916 CGGAAAATCTCTTAATAAATCCATCAATCCTGACGAATGTGTTGCATATGGTGCAGCAGT 6975 Query 196411 TCAGGCTGC 196419 ||| || || Sbjct 6976 TCAAGCAGC 6984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859456065760