Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq220 120 5e-22 seq132 104 4e-17 seq74 89.7 9e-13 >seq220 Length=17533 Score = 120 bits (132), Expect = 5e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 |||||| || | | || | ||| ||||| | || | ||||| ||||| ||||| Sbjct 2318 TATACCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTC 2259 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 |||| ||| | || || | || || |||||||||||||| | |||||| || || Sbjct 2258 AGATAGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGG 2199 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 || || || || || ||||| |||||| |||| | ||| || ||||| || || || Sbjct 2198 TGGAATGCCCTCCTTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTC 2139 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 |||||||| ||||| ||||| |||||||| |||||||| Sbjct 2138 CACTTCTAGTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 >seq132 Length=47203 Score = 104 bits (114), Expect = 4e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || || | ||||| ||| || || || ||||| ||||| |||| | Sbjct 38661 ATATTGTAATCAGAAAGTGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGT 38720 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || || |||||||||||||| || ||| |||| | ||| ||| || Sbjct 38721 TGTTGATCCGGTGGAATCCCTTCTTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTG 38780 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 || || ||||| || || | ||| || ||||| ||||| || ||||| || Sbjct 38781 TCTGACGACTCCACCTCCAAAGTAATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq74 Length=105699 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| || || |||| ||||| ||||||||| || ||||| || | || ||| || Sbjct 40960 ACCAAGTGTAAAGTAGAATCTTTCTGAATATTATAATCAGATAATGTCCGAGCATCTTCC 40901 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTAT-TCCTTCTTTATCTTG 193270 | || ||||| ||| ||||||| | ||||||||||| | ||| |||| || | || Sbjct 40900 AGCTGCTTTCCAGCATAAATTAACCGTTGTTGATCAGGCGATATCTCCTCTTTGCTACTG 40841 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| |||| ||||| ||| |||| | || |||||||| || || || || Sbjct 40840 -ATTTTATTTTTAATATTGTTAATTGTATTGCTTGATTCAACTTCAAGTACGATTGTCTT 40782 Query 193331 ACCTGTTAGCGTTTTTAC-AAATATTTG 193357 || || || ||||| || | ||||||| Sbjct 40781 TCCCGTAAGTGTTTTCACTACATATTTG 40754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650374046560