Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq132 143 5e-29 seq74 113 9e-20 >seq132 Length=47203 Score = 143 bits (158), Expect = 5e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| || ||||| | || || ||||| | || | ||| | ||||| |||||| || Sbjct 38609 AATGATGCCACCACGGAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTA 38668 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||||| | ||||| | |||| ||||| || || ||||||||||||| | |||||||| Sbjct 38669 ATCAGAAAGTGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATC 38728 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||||| || |||||||||||||| || || |||| ||||| || | |||||||| Sbjct 38729 CGGTGGAATCCCTTCTTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGA 38788 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 || || || | |||||| ||||| || || | |||||| Sbjct 38789 CTCCACCTCCAAAGTAATCGTTTTTCCTGTAAGTGTTTT 38827 >seq74 Length=105699 Score = 113 bits (124), Expect = 9e-20 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||||||| || || |||||||||| ||||| ||||||||||||||| Sbjct 40978 CCACCAAGAAGACGTAAAACCAAGTGTAAAGTAGAATCTTTCTGAATATTATAATCAGAT 40919 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||| || || |||||| | ||||| | ||||||||||| | | Sbjct 40918 AATGTCCGAGCATCTTCCAGCTGCTTTCCAGCATAAATTAACCGTTGTTGATCAGGCGAT 40859 Query 192430 ATTCCTTCTTTATCTTGT-ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || | ||||| || | ||||||||||| | ||| | || | || ||||| || Sbjct 40858 ATCTCCTCTTTG-CTACTGATTTTATTTTTAATATTGTTAATTGTATTGCTTGATTCAAC 40800 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT-AATAAATATCTG 192533 ||| || || || || || || | |||||| | || |||| || Sbjct 40799 TTCAAGTACGATTGTCTTTCCCGTAAGTGTTTTCACTACATATTTG 40754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475484313300