Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq220 131 3e-25 seq132 114 2e-20 seq74 100 5e-16 >seq220 Length=17533 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| |||||||| | ||| | || | ||||| ||||| || || Sbjct 2317 ATACCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCA 2258 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || |||| |||| || || || ||||||||||| | ||||||||| ||| Sbjct 2257 GATAGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGT 2198 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| |||| ||||| || |||||||| ||||| Sbjct 2197 GGAATGCCCTCCTTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCC 2138 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 |||||||| || || ||||| || |||| ||||| Sbjct 2137 ACTTCTAGTGTTATCGTTTTTCCTGTTAGAGTTTT 2103 >seq132 Length=47203 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || || ||||| | || || ||||| | || | ||| | ||||| ||||| ||| Sbjct 38610 ATGATGCCACCACGGAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAA 38669 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | | || | | || ||||| || || |||||||| |||| | ||||| || Sbjct 38670 TCAGAAAGTGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCC 38729 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||||||||| || || |||| ||||| || || |||||||| Sbjct 38730 GGTGGAATCCCTTCTTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGAC 38789 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || || || | |||||| ||||| || || | |||||| Sbjct 38790 TCCACCTCCAAAGTAATCGTTTTTCCTGTAAGTGTTTT 38827 >seq74 Length=105699 Score = 100 bits (110), Expect = 5e-16 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 171826 TTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTA 171884 |||||| ||||| | ||||| ||| ||||| || || |||||||||| ||||| Sbjct 40996 TTTTTACGTTTCTTTGCTCCACCAAGAAGACGTAAAACCAAGTGTAAAGTAGAATCTTTC 40937 Query 171885 GAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAAT 171944 |||||||||||| ||||| | || | || |||| || || |||||| ||||||| Sbjct 40936 TGAATATTATAATCAGATAATGTCCGAGCATCTTCCAGCTGCTTTCCAGCATAAATTAAC 40877 Query 171945 CTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT-ATTTTATTTTTTACATTAGTTAT 172003 | ||||| ||||| | ||| | ||||| || | ||||||||||| | ||| | || Sbjct 40876 CGTTGTTGATCAGGCGATATCTCCTCTTTG-CTACTGATTTTATTTTTAATATTGTTAAT 40818 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 |||| ||||| ||||| || || || || || || | |||||| Sbjct 40817 TGTATTGCTTGATTCAACTTCAAGTACGATTGTCTTTCCCGTAAGTGTTTT 40767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131949516400