Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq195 196 1e-44 seq151 104 7e-17 >seq195 Length=28285 Score = 196 bits (216), Expect = 1e-44 Identities = 396/585 (68%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACT--CCTCATCGCCGTGATTCTTCCGTAGCTCTAA 156001 |||| ||||| || ||||| | || | | || | |||||||| || || || || || Sbjct 14060 CATAAAAAAGATCTCTTGC--TCGAATTTCTTCTTTACCGTGATTTTTACGAAGATCCAA 14117 Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT 156061 |||||| ||||| | ||| ||| || | ||| |||||||| ||| | ||| Sbjct 14118 GAATTCAAATATATCTGCATGCCATGGTTCTATATAAATAGCAAAGGCGCCAGGACGCTT 14177 Query 156062 G---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 | ||||| || || ||||| |||||||| || ||||| || | |||||||||||||| Sbjct 14178 GTTCCCACCTTGGTCAACATATCGAGCAGTATTGTTGAATACCCTGAGCATAGGAATAAT 14237 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAAT 156178 |||||| || || ||||| ||||| ||||| |||| | |||| | ||||| Sbjct 14238 ACCATTAGATGTACCATTAGTTCCCGCAATATAACTCCCAGTAGCACGAATACAATGAAC 14297 Query 156179 ATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 || || ||||| || |||| |||| ||| || ||| || | |||| | Sbjct 14298 ATTGAGCCCAATTCCTCCTGCTGTTTTACTAATCATGGCACATGTTTTAAGTGTATCATA 14357 Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCG 156298 ||| |||||||| |||||||||| ||| | || ||| |||| || | |||||| Sbjct 14358 AATTCCTTCAATGGAATCATCTTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATT 14417 Query 156299 TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358 ||| ||||| || || |||| |||||||| ||||| | | ||| || ||||||| Sbjct 14418 TGGAGTTCCTGCATTAAATAATGTAGGTGAAGCATGTGTCATATATTTTGCAGACATAAG 14477 Query 156359 ATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418 || ||||| || || || |||| || | || || |||| | | || | ||| Sbjct 14478 ATTATATGTTTCAATAGCTTTTTCAACATCATCACCATGGATACCAACTGCAACACGCAT 14537 Query 156419 CCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTC 156478 |||||| || || | ||| ||| | ||||| ||| || ||||| || || || Sbjct 14538 TATCATATGTTGGGGTCTTTCTGCAACCTTTCCATTAATACGAAGAAGATAACTTCGCTC 14597 Query 156479 CAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 | |||||||| || ||||| | | | ||||||||| | ||| Sbjct 14598 TAATGTTTTAAATCCAAAATAGTTATATGTAAAATCACGATCGTA 14642 >seq151 Length=20182 Score = 104 bits (114), Expect = 7e-17 Identities = 192/280 (69%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || ||||| ||||| |||||||||| || | ||||| || Sbjct 5871 TGAATATAACCTGTTTCAGCAGTTTTAACAGCAGTATCAATTAATCCTTCTCGACCTGCC 5930 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | |||| ||| || || | || | | ||| | |||| || Sbjct 5931 ATAGCATGGAAGAAAAATTCTTGAGGTGTTAAGCCTCTAAGATATGAGTTTTCAATAAAT 5990 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 || | | || || || || || || || || || | || || | | | | Sbjct 5991 CCGCCTGATTCAGGACTATAATCATCTTTAGTGAAATGCGGTAAAGTTCTATATTTAAAT 6050 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || || |||||||| ||||| || || |||| ||||| | || | | ||| ||||| Sbjct 6051 CCATAAGGGATACGTTTTCCTTCTACTATCTGTTGTCCTACACATGCAGACATTTGCGAT 6110 Query 302839 ATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| ||||| || ||||| || ||||| ||||||| Sbjct 6111 ATATTAATAAATGAC--CCCTTAGATCCAGCTGTTACCAT 6148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810848956646