Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq132 116 3e-21 >seq132 Length=47203 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || || || ||||| ||||| | || || || | | |||||| | || | Sbjct 38827 AAAACACTTACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCAGACACAATTGACAAT 38768 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| ||||| ||||| |||||||| || || || ||||||||||| | |||||| Sbjct 38767 GTCAAAAGCAAGATTCAAGATAAAGAAGGGATTCCACCGGATCAACAACGGCTAATCTTT 38708 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||| |||||||| |||| | || ||||| || || || || |||||| Sbjct 38707 GCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGAAAGAATCG 38648 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 || || ||| | || ||||| | || || ||| | |||||| Sbjct 38647 ACTCTTCACCTTGTATTGCGGCTCCGTGGTGGCATCATTGAGCC 38604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895586708240