Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq132 122 1e-22 seq220 102 1e-16 >seq132 Length=47203 Score = 122 bits (134), Expect = 1e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAA 146104 |||||| | ||||||||||| |||||| | || || || | | | || || ||| | || Sbjct 38827 AAAACACTTACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCA-GACACAATTGACAA 38769 Query 146105 TGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTT 146164 ||| |||| || || ||| ||||||||| |||||||| ||||||||| | || || || Sbjct 38768 TGTCAAAAGCAAGATTCAAGATAAAGAAGGGATTCCACCGGATCAACAACGGCTAATCTT 38709 Query 146165 TGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATC 146224 ||| || || || || || ||| ||||| | | ||||| ||||| || |||||||| Sbjct 38708 TGCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGAAAGAATC 38649 Query 146225 GACTATCCATTTAGTATTACG 146245 |||| | || | ||||| || Sbjct 38648 GACTCTTCACCTTGTATTGCG 38628 >seq220 Length=17533 Score = 102 bits (112), Expect = 1e-16 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 146044 TAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAA 146102 ||||||| ||||||||||||| || || | || || ||| ||| | ||||| || | Sbjct 2101 TAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCA-GATACAATCGAC 2159 Query 146103 AATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATT 146162 ||||| |||| ||||| ||| || || ||||||||||| || ||||| | | ||| Sbjct 2160 AATGTTAAAAGCAAAATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATT 2219 Query 146163 TTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAA 146222 ||||| || || || | || || | ||| || | || || ||||| || |||||| Sbjct 2220 TTTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGAA 2279 Query 146223 TCGACTATCCATTTAGTATTACG 146245 ||||| | ||| | |||||||| Sbjct 2280 TCGACCCTTCATCTTGTATTACG 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786162881905360