Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq276 95.1 2e-14 seq151 86.0 8e-12 >seq276 Length=28560 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 171688 AATGGTTCTCGTGAATTTTTAGATT-TATGCGGGTTTACTGAAAGAAAAGAAGGTGATTT 171746 |||||||| |||| | | || | ||| ||| || || ||| ||||||||||| | Sbjct 20368 AATGGTTCAAAAGAATATCTTGACTCTAT-CGGATTAACAGAACACCAAGAAGGTGATCT 20426 Query 171747 AGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGTTATAC 171806 ||||| |||||||| ||||||||| |||| || || ||||||| || ||| | || Sbjct 20427 TGGTCCTATTTATGGTTTTCAATGGCGACACTTCGGCGCAAAATATATTGATTGTAAAAC 20486 Query 171807 AGATTACACAGGACAAGGAGTGGACCAATTA 171837 ||||| ||||| |||||||| |||||| || Sbjct 20487 TGATTATACAGGTCAAGGAGTTGACCAACTA 20517 >seq151 Length=20182 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 50290 GTTGGAGACTTGGTTAAAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAA 50349 |||||||| | | ||||||| | | ||||||||||| || | || ||||| || Sbjct 7098 GTTGGAGAGTAG----AAAGACATATTACAGATGGTGATGTGGTTATTTTTAATAGACAG 7043 Query 50350 CCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACA 50409 || || | |||||| |||||| || | || ||| || ||| |||| Sbjct 7042 CCTTCATTACATAAAATGTCTATGATGGGTCATCGTGTCAAAGTTATGCCATATTCAACA 6983 Query 50410 TTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATG 50469 || || |||||| || | || | | |||||||| ||||||||||| ||||||||| Sbjct 6982 TTCCGTATTAATTTATCTGTAACACCACCGTATAATGCCGATTTTGATGGAGATGAAATG 6923 Query 50470 AATTTACATGTTCCTCAATC 50489 ||| | |||||||||||||| Sbjct 6922 AATCTTCATGTTCCTCAATC 6903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628528387322880