Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq132 154 3e-32 seq220 123 5e-23 seq29 95.1 2e-14 seq74 89.7 1e-12 >seq132 Length=47203 Score = 154 bits (170), Expect = 3e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || | ||| ||||| ||||||||||| ||||| |||||||| || |||| || Sbjct 38628 CGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCTTCCA 38687 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | || ||||||||||||||||| | ||||||||| || || || ||||| ||| Sbjct 38688 TCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTCTTTA 38747 Query 82716 TCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| |||||||| ||||| ||||| || || | || || |||||||| || Sbjct 38748 TCTTGAATC-TTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGTAAT 38806 Query 82775 CGTCTTGCCTGT 82786 ||| || ||||| Sbjct 38807 CGTTTTTCCTGT 38818 >seq220 Length=17533 Score = 123 bits (136), Expect = 5e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||||||||| ||||| || |||||||| | | |||||||| || || Sbjct 2290 TGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCGTCTTCCAGCTGC 2231 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| |||| | ||||| || || || || || ||||| |||||||| ||| Sbjct 2230 TTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGAAT-TTT 2172 Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||| ||||| || || ||||| | ||| ||||| | |||||||| || ||||| Sbjct 2171 GCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATCGTTTTTCCTGT 2112 Query 82787 CAACGTCTTTAC 82798 | || ||||| Sbjct 2111 TAGAGTTTTTAC 2100 >seq29 Length=6877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 143997 CATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACG 144056 ||||| ||||| || ||||||| ||| | || | |||| || |||||||||||||| Sbjct 5637 CATATTGAACTACGGCGATGGGCAGATATACTTGTATTAGCACCATTAACAGCAAATACA 5696 Query 144057 TTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGG 144116 | |||||||| || ||||| ||||||||||| || |||||| |||| || | || ||| Sbjct 5697 CTGGCAAAAATGGCAAATGGATTATGCGATAATCTATTAACATGTATATTACGTGCATGG 5756 >seq74 Length=105699 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| | ||| ||||| | |||||| |||||||| |||||||||||||||| | | | | Sbjct 40967 ACGTAAAACCAAGTGTAAAGTAGAATCTTTCTGAATATTATAATCAGATAATGTCCGAGC 40908 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT-TCCT 82709 ||||| || || ||||||||| | |||| | ||||||||| || | ||| |||| Sbjct 40907 ATCTTCCAGCTGCTTTCCAGCATAAATTAACCGTTGTTGATCAGGCGATATCTCCT 40852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822696481362