Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq195 248 2e-60 seq325 113 1e-19 seq151 107 5e-18 seq276 87.8 4e-12 >seq195 Length=28285 Score = 248 bits (274), Expect = 2e-60 Identities = 471/683 (69%), Gaps = 23/683 (3%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||| || ||||| | || || |||| | |||||| | ||||| || | Sbjct 14620 ACTATTTTGGATTTAAAACATTAGAGCGAAGTTATCTTCTTCGTATTAATGGAAAGGTTG 14561 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| | || ||||| ||| | | |||||||| ||||||| ||||| ||||| || Sbjct 14560 CAGAAAGACCCCAACATATGATAATGCGTGTTGCAGTTGGTATCCATGGTGATGATGTTG 14501 Query 110422 AAGCTGTTATTGAATGTTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCC 110479 || | ||||||| ||| || | || | | |||| | | | |||||| | || Sbjct 14500 AAAAAGCTATTGAAACATATAATCTTATGTCTGCAAAATATATGACA--CATGCTTCACC 14443 Query 110480 TACCCTATTTAACGCAGGAACT---AATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536 ||| ||||||| ||||||||| ||| ||| | | || ||||| || || Sbjct 14442 TACATTATTTAATGCAGGAACTCCAAATCCT---CAACTTTCGTCCTGCTTCCTAGTAAC 14386 Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTC 110596 || || |||||||| |||||||| ||||||||| | |||||| | ||| | ||| Sbjct 14385 TATGAAAGATGATTCCATTGAAGGAATTTATGATACACTTAAAACATGTGCCATGATTAG 14326 Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT 110656 ||||| | ||||||||||| | | |||||| |||||| | | || |||| Sbjct 14325 TAAAACAGCAGGAGGAATTGGGCTCAATGTTCATTGTATTCGTGCTACTGGGAGTTATAT 14266 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 || | | || ||| | || | ||| || |||| ||| | || || |||||| | || Sbjct 14265 TGCGGGAACTAATGGTACATCTAATGGTATTATTCCTATGCTCAGGGTATTCAACAATAC 14206 Query 110717 TGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGA 110773 ||| |||||| | |||||||| || | | |||| | |||||||| ||| | || Sbjct 14205 TGCTCGATATGTTGACCAAGGTGGGAACAAGCGTCCTGGCGCCTTTGCTATTTATATAGA 14146 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833 ||| |||||| ||||||||||||||||||| || |||||||||||||| || | |||| Sbjct 14145 ACCATGGCATGCAGATATATTTGAATTCTTGGATCTTCGTAAAAATCACGG---TAAAGA 14089 Query 110834 ACAAA---GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 | ||| ||||| | ||| | ||||||| | ||||| | || ||||| |||||||| Sbjct 14088 AGAAATTCGAGCAAGAGATCTTTTTTATGGCTTATGGATACCTGACTTATTTATGAAACG 14029 Query 110891 TGTTCAAGAAAATGGCATG-TGGTCTCTTA-TGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 || ||| |||| || | | | |||| | ||||| | | ||||||||| Sbjct 14028 AGTGGAAGCAAAT--CAAGATTGGAGCTTATTTTGTCCGAACGAAGCCCCTGGTCTAGAC 13971 Query 110949 GATGTATATGGAAAAGAGTTTGA 110971 ||||| || ||| |||||||||| Sbjct 13970 GATGTTTACGGAGAAGAGTTTGA 13948 >seq325 Length=14064 Score = 113 bits (124), Expect = 1e-19 Identities = 325/495 (66%), Gaps = 4/495 (1%) Strand=Plus/Minus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 || |||||| | || |||||||||| |||||| |||| | || ||||||| | ||| Sbjct 11487 TCGATTCCTTCTGTAGTGGATGGTTTAAAACCTGGACAGAGAAAAGTTATATTTGGGTGT 11428 Query 279917 TTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAA 279976 || ||||||||||| || |||||| ||||| || ||| |||| ||| |||| || Sbjct 11427 TTTAAAAGAAAATTAAAAAGTGAAATTAAAGTTGCACAATTATCAGGATATATTTCTGAG 11368 Query 279977 CATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAA 280036 ||| | | |||||||| || || |||| | | || |||| | || ||| Sbjct 11367 CATACTGCATATCATCATGGAGAGCAAAGTCTTACACAAACGATAATAGGATTAGCACAA 11308 Query 280037 GATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 ||| | | || || | ||||| | ||| ||||| ||||||||| ||||| Sbjct 11307 ACATTTGTTGGAAGTAATAATATTAATCTCATGAAACCCAATGGGCAATTTGGTACTCGT 11248 Query 280097 ATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTT-TCAGATAT 280155 | || ||| |||||| || | | ||||| || ||| || || || | | Sbjct 11247 TTGCAAGGTGGGAAAGATGCTGCATCTCCACGTTATATTTTTAC-TGAGTTGTCTCCTTT 11189 Query 280156 TACAAACAAGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGG 280215 ||| || ||||| | | || ||| |||| | ||| | | || | || ||||| Sbjct 11188 GACACGGAAAATATTTGTAGAATCAGATGATGCATTGTTAAATTACCTTAATGAAGATGG 11129 Query 280216 TCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGC 280275 || |||| ||||| | |||| ||| || || ||| | |||||||| ||||| Sbjct 11128 TCAATCTATAGAACCTCTTTGGTATGTTCCTATAATACCTTTAATTCTTGTGAATGGATG 11069 Query 280276 TCAAGGAATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATTAT 280335 | ||||||||||||| || | | | | ||| || | | ||||| |||||| ||| Sbjct 11068 TGAAGGAATTGGAACGGGATGGAGTTCTTATATACCTAATTTTAATCCTATTGAT-TTAG 11010 Query 280336 ATTACAA-ATTCGTA 280349 | | || ||||||| Sbjct 11009 TTAATAATATTCGTA 10995 >seq151 Length=20182 Score = 107 bits (118), Expect = 5e-18 Identities = 126/167 (75%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 |||| |||| | || ||||| || || ||| | ||||||||||||||||||| |||| Sbjct 7067 TGATGTGGTTATTTTTAATAGACAGCCTTCATTACATAAAATGTCTATGATGGGTCATCG 7008 Query 305383 AGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTAT 305440 |||||||| ||| | ||| | |||| || | ||| || || | || ||| Sbjct 7007 TGTCAAAGT--TATGCCATATTCAACATTCCGTATTAATTTATCTGTAACACCACCGTAT 6950 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||| |||||||||||||||||||||||| | ||||| |||||||| Sbjct 6949 AATGCCGATTTTGATGGAGATGAAATGAATCTTCATGTTCCTCAATC 6903 >seq276 Length=28560 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 59062 TATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCTCCCCA 59118 || |||||||| ||| | | ||||| ||||| || |||||| ||||| | || | Sbjct 20517 TAGTTGGTCAACTCCTTGACCTGTATAATCAGTTTTACAATCAATATATTTTGCGCCGAA 20458 Query 59119 ATAACGCCATTGAAAACCATATACAGGTCCAAGAGTTCCTTCAGGATATTCATTTAAACC 59178 | ||||||||||||||||| | ||| |||||| ||||| | | ||| |||| || Sbjct 20457 GTGTCGCCATTGAAAACCATAAATAGGACCAAGATCACCTTCTTGGTGTTCTGTTAATCC 20398 Query 59179 ACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAA 59225 |||||||||| ||||| ||| ||| | ||||| ||||||| Sbjct 20397 GATAGAGTCAAGATATTCTTTTGAACCATTTGCGTCCCATATATGAA 20351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807356238038