Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq220 100 2e-16 >seq220 Length=17533 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || | ||| || || ||||| || || ||||| || || || || || || Sbjct 2302 CGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCG 2243 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| || || ||||||||||| |||||||| || || | || | || || ||| Sbjct 2242 TCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTG 2183 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| ||| ||||| ||| | || || ||||||||| || | || || Sbjct 2182 TCTTGAATTTT-GCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTAT 2124 Query 33714 CGTTTTACCTGTTAACGTTTTTAC 33737 |||||| ||||||| |||||||| Sbjct 2123 CGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702565823360