Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq132 154 3e-32 seq220 109 1e-18 seq74 84.2 5e-11 >seq132 Length=47203 Score = 154 bits (170), Expect = 3e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||||||||| |||||||| ||||| || |||||| | || Sbjct 38827 AAAACACTTACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCAGACACAATTGACAAT 38768 Query 206245 GT--AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||||| ||||||||| |||||||| ||| ||||| ||| | || |||| Sbjct 38767 GTCAAAAGCAA--GATTCAAGATAAAGAAGGGATTCCACCGGATCAACAACGGCTAATCT 38710 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || |||||||||||||| |||||||| || | | |||||||| |||||||||| | Sbjct 38709 TTGCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGAAAGAAT 38650 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | |||||||||||||| ||| | || || Sbjct 38649 CGACTCTTCACCTTGTATTGCGGCTCCG 38622 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| |||||||||||||| || |||||||||| ||| || |||| | || Sbjct 38622 CGGAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTT 38681 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| |||| ||||||||| || ||||| |||||||||||| Sbjct 38682 CTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGA 38726 >seq220 Length=17533 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG--AAT 206242 ||||| || |||||||||||||| || | ||||||||| || || ||| ||| ||| Sbjct 2103 AAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGACAAT 2162 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 |||||||| |||||||| || || || ||| |||||| || | | || | Sbjct 2163 GTTAAAAGCAAA--ATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATTT 2220 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | ||||| |||||| ||||||| || |||| | | || ||||| |||||||||| | Sbjct 2221 TTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGAAT 2280 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || ||||| ||||| || | ||||| Sbjct 2281 CGACCCTTCATCTTGTATTACGCCTTCG 2308 >seq74 Length=105699 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||| | ||||| | ||| | |||||| |||||||| | |||||| |||| || |||| Sbjct 40971 GAAGACGTAAAACCAAGTGTAAAGTAGAATCTTTCTGAATATTATAATCAGATAATGTCC 40912 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||||| || | || | |||||||||| Sbjct 40911 GAGCATCTTCCAGCTGCTTTCCAGCATAAATTAACCGTTGTTGA 40868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815379135718