Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq195 360 3e-94 >seq195 Length=28285 Score = 360 bits (398), Expect = 3e-94 Identities = 627/903 (69%), Gaps = 12/903 (1%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || ||||| ||||||| || | ||||| ||| || ||||| | || | Sbjct 13948 TCAAACTCTTCTCCGTAAACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTC 14007 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT-AAA 69635 || | | || | | |||||||||||||||| || || ||||| | ||| || ||| Sbjct 14008 CAATCTTGATTTGCTTCCACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAA 14066 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||||| | || | ||||||| || || |||||| |||||| | || || | Sbjct 14067 AAGATCTCTTGCTCGAATTTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAA 14126 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 ||||| | |||||||||||||| ||| || || | | | || || || || || || || Sbjct 14127 TATATCTGCATGCCATGGTTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACC 14186 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 || || | |||| ||||| || || | || || ||||| ||||||||||||||||| Sbjct 14187 TTGGTCAACATATCGAGCAGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGA 14246 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | ||||||| ||||| | ||||||||| || | || |||||| | || | || || Sbjct 14247 TGTACCATTAGTTCCCGCAATATAACTCCCAGTAGCACGAATACAATGAACATTGAGCCC 14306 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 ||||||||||| ||||| || | ||||| ||| | ||| ||||| || || || Sbjct 14307 AATTCCTCCTGCTGTTTTACTAATCATGGCACATGTTTTAAGTGTATCATAAATTCCTTC 14366 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||| ||||||| |||| | | || || ||| || | |||| ||| | |||||| Sbjct 14367 AATGGAATCATCTTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCC 14426 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 ||||||||||||||||| || || || || | ||||| |||| | ||||| ||||| Sbjct 14427 TGCATTAAATAATGTAGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGT 14486 Query 70056 TTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||||||||| ||| | ||| ||| ||| || || | || |||||||| | ||||| Sbjct 14487 TTCAATAGCTTTTTCAACATCATCAC-CATGGATACCAACTGCAACACGCATTATCATAT 14545 Query 70115 GCTGAGGTCGTTCT---ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | || |||| |||| ||| || |||| || | || || | || | | Sbjct 14546 GTTGGGGTCTTTCTGCAACCTTTCCATTA---ATACGAAGAAGATAACTTCGCTCTAATG 14602 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||||||| ||||||||||| |||| ||| || | ||||| ||||| || | ||||| Sbjct 14603 TTTTAAATCCAAAATAGTTATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTT 14662 Query 70232 TATCCTTATATTTGGTAACTATATCCATA-ACAGTAGGTGAGATAATCGGAGATCGTTTA 70290 || || | | | ||| | | |||| | | || || || || ||| | || Sbjct 14663 CATTGGCATGTCTCATTACTGT-TTCATATGTTTTTAGAGAAATCATTGGGGATGGCTTG 14721 Query 70291 CCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttttt 70350 |||| | ||||||||||||| ||||||| || |||| | ||||| |||||| Sbjct 14722 TTATTTCTTGGATTAACATAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTA 14781 Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410 |||| |||||| | ||| |||| || || | ||||| | ||||||||| || ||||| Sbjct 14782 GTTTGCTTGTGAAGATTAGATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGC 14841 Query 70411 TGT 70413 ||| Sbjct 14842 TGT 14844 Score = 205 bits (226), Expect = 1e-47 Identities = 606/937 (65%), Gaps = 57/937 (6%) Strand=Plus/Plus Query 68559 CTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG- 68617 |||||||| | ||||| | ||| ||| | | | ||| || || |||||| || | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAACGCTTTAATTTCTGCTGGAATACTAGG 12955 Query 68618 --TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAA 68675 |||||||||| || ||| || | |||||| |||| || || |||||||||||| Sbjct 12956 TATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACAA 13015 Query 68676 TTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAA 68735 | | || |||| | |||| || ||||| |||| ||||||||| || | | Sbjct 13016 TCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAAG 13075 Query 68736 CACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAAT 68795 || | |||| || || ||||||||||||||||| | | | || ||| || || || Sbjct 13076 GACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGAT 13135 Query 68796 TTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGT 68855 ||||| || ||| || ||||||||||| || | | | || | || |||| | Sbjct 13136 TTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATCG 13195 Query 68856 TATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAG 68915 | || ||| |||||| | | ||| ||||| | ||| | || || || ||||| | Sbjct 13196 TGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACAT 13255 Query 68916 ATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTC 68975 ||| ||||| | ||| || | ||| ||||| | || |||||||| || ||||| Sbjct 13256 ATCATATTGCAAAATACCTTGGGATGCTGGCGATCCTTCGTAGGTTTCATATGGACCTTC 13315 Query 68976 CTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTT 69035 | || || | ||| || ||| |||| || | | ||| || ||||| || || || Sbjct 13316 TTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAATATTTT 13375 Query 69036 CTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA-ATAAATGCAT 69094 | || || |||| ||| | | || ||||| | | ||| ||| | ||| |||| Sbjct 13376 AATGTTAAGCTCTTTTGCATGAGGTGAGTCAAATGG-CATTCTAAGAGATAAAAAGGCAT 13434 Query 69095 CTGCCA--------------------------------------------ATCCCTGAAC 69110 | || | | || ||||| Sbjct 13435 CAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCTTGAAC 13494 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170 ||||| || || || | |||||| |||||||| || ||||||| | ||||||||| Sbjct 13495 ACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGATAATA 13554 Query 69171 ATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTT 69230 ||||| ||| ||||| ||||| | ||||| |||| ||||| || || | ||| || Sbjct 13555 ATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGTAGCTT 13614 Query 69231 GAGAAAATC--AAAT-CGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATT 69287 ||||||| |||| | | || ||| ||| | | | || | | ||| ||||| Sbjct 13615 TTGAAAATCATAAATGCCTTTGTCAATA--AAAGTTGGT-AAAGCAATACTTGCAAGATT 13671 Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347 ||||| ||||| |||| | | || ||| | ||||| || || |||| |||| ||| Sbjct 13672 GCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAGAACA 13731 Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG-TTACAGGCGTCCTTGTAAAGAA 69406 |||||||||||| ||||| | |||||| | ||| | || || || || || ||||| | Sbjct 13732 TTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAAAGCA 13790 Query 69407 TAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||| ||| |||| || || |||| | ||| | ||| Sbjct 13791 TAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAAT 13827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905726083120