Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq220 96.9 3e-15 >seq220 Length=17533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || ||||| | ||| | || || ||||| || ||||||||||| | | || || Sbjct 2302 CGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCG 2243 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| |||| | ||||||||| ||||| || | ||||| || Sbjct 2242 TCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTG 2183 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| |||| | | || | || |||| | ||| |||||||| ||||| Sbjct 2182 TCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATC 2123 Query 27213 GATTTGCCCGTCAGAGTTTTCAC 27235 | ||| || || |||||||| || Sbjct 2122 GTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932545958096