Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq195 91.5 2e-13 >seq195 Length=28285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 234/357 (66%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 |||||||||||| | ||||| || | |||| |||| ||| | | || || || Sbjct 13486 ACCTTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCAC 13545 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| |||| ||||| | |||| |||| | | |||| ||||| | || Sbjct 13546 AGGATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATC 13605 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 ||| || |||| | ||||| || ||| ||| | | | | |||| | || || Sbjct 13606 ATGTAGCTTTTGAAAATCATAAATGC------CTTTGTCAATAAAAGTTGGTAAAGCAAT 13659 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 ||| | |||||||||||| ||||| | || ||||| | ||||| || || Sbjct 13660 ACTTGCAAGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCA 13719 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 ||| || |||| || || ||||| | |||||| || || || ||||| ||||| Sbjct 13720 TAAATTAGAACATTTGATAGTCCCAAGATTCTTCTGATTCGATTTACGATTGCATGCATC 13779 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || || ||||| | || | || ||||| ||||||| || ||||| || | ||| Sbjct 13780 TTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCA 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029189556800