Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq195 122 1e-22 >seq195 Length=28285 Score = 122 bits (134), Expect = 1e-22 Identities = 243/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCAC 118594 |||||| ||||| | |||||| ||||||||||| |||| ||| ||| ||| ||||| Sbjct 13486 ACCTTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCAC 13545 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 |||||| |||| ||| |||| | |||||| |||| | | ||||| ||||| | || Sbjct 13546 AGGATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATC 13605 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 ||| ||||||| ||||| || ||| ||| | | | | | || | || || Sbjct 13606 ATGTAGCTTTTGAAAATCATAAATGC------CTTTGTCAATAAAAGTTGGTAAAGCAAT 13659 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || ||||| || |||| ||||| | | ||||| || ||||| ||||| Sbjct 13660 ACTTGCAAGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCA 13719 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAG-TTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 || || |||| || || || |||||| ||||| ||||| || || || || |||| Sbjct 13720 TAAATTAGAACATTTGATAGT-CCCAAGATTCTTCTGATTCGATTTACGATTGCATGCAT 13778 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 | || |||||||| | || | || ||||| || || | | ||||| || | ||| Sbjct 13779 CTTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCA 13836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/286 (68%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||| || || | || ||||| ||||| ||||| || ||| | |||||| | ||| Sbjct 13088 ATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGATTTGAGATGTACT 13147 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 || || ||||| ||||| | |||||| ||||||||| || | | ||| | Sbjct 13148 TGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATCGTGCAATATTAAC 13207 Query 118301 CTTGAGAGCGTCCCAGTCGTAGTTGAGCTTT-GTCTCCCCCTGCCACATATCAAACTGGA 118359 || | | |||||||| | | | || | | | | | |||||||||| | || | Sbjct 13208 TTTTAAACTATCCCAGTCCCA-TAAATCTGTAGGAACTACGTTCCACATATCATATTGCA 13266 Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 118419 ||||||||||| ||||||||||| || | || |||||||| || || | | |||| Sbjct 13267 AAATACCTTGGGATGCTGGCGATCCTTCGTAGGTTTCATATGGACCTTCTTCTTGTGCCA 13326 Query 118420 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAAT 118465 ||||| | || || || ||||| ||||| || |||||||| || Sbjct 13327 ATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAATAT 13372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432432502480