Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq220 134 2e-26 >seq220 Length=17533 Score = 134 bits (148), Expect = 2e-26 Identities = 171/232 (74%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || || || || || || || || || || || || || || ||| |||| || | Sbjct 2100 GTAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGAC 2159 Query 27478 AAT-TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 ||| || || || |||||||| ||||||||||| ||||| || ||||| |||||| |||| Sbjct 2160 AATGTTAAAAGC-AAAATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAAT 2218 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||| || ||||| || || || | || || ||| | ||||| ||| |||| || || Sbjct 2219 TTTTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGA 2278 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTC---GCGGTGGACAAGTTTAAAGT 27645 ||| || |||||||| || || || |||| ||||| || ||||||| || Sbjct 2279 ATCGACCCTTCATCTTGTATTACGCCTTCGTGGCGGTATACGAGTTTAACGT 2330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307847860960