Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq132 140 8e-28 seq220 131 4e-25 >seq132 Length=47203 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||||||||| || ||||| ||||| || ||||| | ||| || |||||||| ||| Sbjct 38634 ACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCTTCCATCCTCC 38693 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | |||||| || || ||||| || |||||||| || || |||| ||||| || || || Sbjct 38694 AACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTCTTTATCTTGA 38753 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || || || ||||| || || ||||| | ||| ||||| ||| Sbjct 38754 ATCTTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGTAATCGTTTTT 38813 Query 211086 CCCGTGAGAGTCTTTAC 211102 || || || || || || Sbjct 38814 CCTGTAAGTGTTTTCAC 38830 >seq220 Length=17533 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| ||||| || || ||||| ||||| || || || | || || Sbjct 2309 ACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGT 2250 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || || ||||||||||||||||| || || || | || |||||||| || |||| || Sbjct 2249 CCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCC 2190 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || || || ||| || || ||||| || || || ||| || || || Sbjct 2189 CTCCTTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAG 2130 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || ||||| ||||| || ||||| ||||| Sbjct 2129 TGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146683114670