Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq220 123 6e-23 seq357 89.7 1e-12 >seq220 Length=17533 Score = 123 bits (136), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||||| || || || |||||||| |||| |||||| || | | || Sbjct 2309 ACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGT 2250 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| || || || || | || |||||||| || ||||| || Sbjct 2249 CCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCC 2190 Query 225612 TTCCTTGTCTTGGATCTTTTGC--TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||||||||||| | |||||| || ||| ||||| || ||||| | |||||| ||| Sbjct 2189 CTCCTTGTCTTGAA--TTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCT 2132 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700 | || ||||| || || || | |||||||| Sbjct 2131 AGTGTTATCGTTTTTCCTGTTAGAGTTTTTA 2101 >seq357 Length=8428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| || || || ||||| | ||||||||||||||||||||| ||||| |||| Sbjct 7003 TTCTGGATGTCCGAAGAACCAGAAGAGATGTTGATAAAGGATAGGATCCCCTCCTCCTGC 6944 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||| | ||| |||||||||||||| ||| || || Sbjct 6943 GACATCATAGAAGGAAGTATTAAAATTTCAATCCGTCAA 6905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525730008452