Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq195 475 5e-129 >seq195 Length=28285 Score = 475 bits (526), Expect = 5e-129 Identities = 1289/1969 (65%), Gaps = 134/1969 (7%) Strand=Plus/Plus Query 76967 CTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG- 77025 |||||||| | ||||| | |||||| | | ||| || || |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAACGCTTTAATTTCTGCTGGAATACTAGG 12955 Query 77026 --TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAA 77083 |||||||||| || ||| || || |||||| |||| || ||| |||||||||||| Sbjct 12956 TATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACAA 13015 Query 77084 TTTCCTC--TCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGAC 77141 | ||| || |||| | |||| || ||||| |||| |||||||||||| | Sbjct 13016 T--CCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCA 13073 Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 | || | |||| || || ||||||||||||||||| | | | || || || | Sbjct 13074 AGGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGG 13133 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261 ||||||| ||| || || ||||||||||| || | | | || | ||| |||| | Sbjct 13134 ATTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATAT 13193 Query 77262 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAA 77321 | || ||| |||||| | | ||| ||||| | ||||| ||| || || | ||| Sbjct 13194 CGTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCAC 13253 Query 77322 AGATCGTATTGTAGAATTCCGT----TACTAGCATATGATCCATTATATGTTTCATAAGG 77377 | ||| ||||| | ||| || | | || || ||||| | || |||||||| || Sbjct 13254 ATATCATATTGCAAAATACCTTGGGATGCTGGC----GATCCTTCGTAGGTTTCATATGG 13309 Query 77378 TCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAA 77437 |||||| || || | ||| || ||||| | ||| | | ||| || ||||| || Sbjct 13310 ACCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAA 13369 Query 77438 AATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGA-ATAA 77496 || || | || || |||| ||| | | ||||| || | | ||| ||| | || Sbjct 13370 TATTTTAATGTTAAGCTCTTTTGCATGAGGTGAGTCAAATGGC-ATTCTAAGAGATAAAA 13428 Query 77497 AGGCATCTGC--------------------------TAAT------------------CC 77512 ||||||| || |||| || Sbjct 13429 AGGCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACC 13488 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 ||||| ||||| ||||| || | |||||| ||||| || | |||||||| | ||| Sbjct 13489 TTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGG 13548 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||||||||||| || ||||| ||||| | ||||||| | || ||||| || || | Sbjct 13549 ATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATG 13608 Query 77633 TAGTTTAAGAAAATCAAATCTTCCAT---CTATAACAAACATGTTCAAAGCTATAGATGC 77689 ||| || |||||||| | | || | | |||| || || | ||||| ||| ||| Sbjct 13609 TAGCTTTTGAAAATCATAAATGCCTTTGTCAATAA--AAGTTGGT-AAAGCAATACTTGC 13665 Query 77690 TAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGAT 77748 ||||| ||||| ||||| |||| | | | || ||| | ||||| || || |||| || Sbjct 13666 AAGATTGCAAACAGCTACTTCATCTGGAGATGA-ATACTCGATTATTTCAGTGCATAAAT 13724 Query 77749 TACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTAT 77808 || |||||||||||| || ||||| | || || || |||||||| || |||| Sbjct 13725 TAGAACATTTGATAGTCCCAAGATTCTTCTGATTCGATTTACGATTGCATGCATCTTTAT 13784 Query 77809 AAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 77868 |||| ||||| ||| | || || || |||||| ||| | ||| | | ||| | | || Sbjct 13785 AAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTC 13843 Query 77869 TAGCTTTTATCA--TAGATTTG--------TATCGCCTCTCTCTTTCATAT--------- 77909 | |||| || | || ||| | | || | | |||||||| Sbjct 13844 TGTGCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTT 13903 Query 77910 -----------------TGAG-TATATAGCCGT-----------TCAAATTCATCTCCCC 77940 ||| |||||| || ||||| || ||||| Sbjct 13904 TTAAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGT 13963 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 ||||||| || | |||||| ||| || || || | || ||| || || | | | Sbjct 13964 AAACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTT 14023 Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT-AAATAGATCTCGGGTTCTA 78059 |||||||||||||| | ||||||||||||| ||| || ||| ||||||| | || | Sbjct 14024 CCACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGA 14082 Query 78060 TGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCAT 78119 |||||| || || ||| || |||||| | || || | ||||| | ||||||| Sbjct 14083 ATTTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCAT 14142 Query 78120 GGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTG 78179 ||||||| ||| || || | | ||||| || || || || || || || | ||||| Sbjct 14143 GGTTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGA 14202 Query 78180 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCA 78239 || || || || | || || | ||| ||||||||||| |||||||| ||||| ||||| Sbjct 14203 GCAGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCC 14262 Query 78240 GAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGC 78295 | ||||||||| ||| | || |||||| |||| | || ||| ||||||||||| Sbjct 14263 GCAATATAACTCCCAGTAGCACGAATA----CAATGAACATTGAGCCCAATTCCTCCTGC 14318 Query 78296 CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATC 78355 | ||| || | || || ||| | |||||| || || || || || ||||| Sbjct 14319 TGTTTTACTAATCATGGCACATGTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATC 14378 Query 78356 CATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAA 78415 |||| | | || || ||| || | |||| ||| |||||||||||||||||| Sbjct 14379 TTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAA 14438 Query 78416 TGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGA 78475 ||| || || ||||| || | ||||| |||| | ||||| ||||||||||||||| Sbjct 14439 TGTAGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTT 14498 Query 78476 TTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 ||| | || ||| || || || || |||||||| | |||||| || |||||||| Sbjct 14499 TTCAACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTC 14558 Query 78536 AACCGTCTTATTATTTATTTTCAACAAGTATGATTT--TTCCAAAGTTTTAAAACCAAAA 78593 | ||| | ||| | || ||| || | || || || |||||||| |||||| Sbjct 14559 TGCAACCTT-TCCATTAATACGAAGAAG-ATAACTTCGCTCTAATGTTTTAAATCCAAAA 14616 Query 78594 TAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTG 78653 ||||| |||| ||| || | ||||| ||||| || | ||||| || | | | Sbjct 14617 TAGTTATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTC 14676 Query 78654 GTAACAATATC-CATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATT 78712 | || | || ||| ||| ||||| || || ||| | |||| | ||||| Sbjct 14677 ATTACTGTTTCATATGTTTTTAG-AGAAATCATTGGGGATGGCTTGTTATTTCTTGGATT 14735 Query 78713 AACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAG 78772 |||||||| | ||||||| || |||| | ||||| |||||| |||| |||||| || Sbjct 14736 AACATAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAG 14795 Query 78773 ATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGT 78821 ||||||||| || || | ||| || | |||||||||||| ||||| ||| Sbjct 14796 ATTAGATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665691357120