Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq195 441 1e-118 >seq195 Length=28285 Score = 441 bits (488), Expect = 1e-118 Identities = 1276/1962 (65%), Gaps = 120/1962 (6%) Strand=Plus/Plus Query 75562 CTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG- 75620 |||||||| | ||||| | |||||| | | ||| || || |||||| | | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAACGCTTTAATTTCTGCTGGAATACTAGG 12955 Query 75621 --TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAA 75678 |||||||||| || || || | |||||| |||| || || |||||||||||| Sbjct 12956 TATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACAA 13015 Query 75679 TTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAA 75738 | | || |||| | |||| || ||||| || | |||||||||||| | | Sbjct 13016 TCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAAG 13075 Query 75739 TACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAAT 75798 || | |||| || || ||||||||||||||||| | | | || || || | || Sbjct 13076 GACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGAT 13135 Query 75799 TTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGT 75858 ||||| || || || ||||||||||| || | | | || | ||| |||| | Sbjct 13136 TTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATCG 13195 Query 75859 TCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAG 75918 | || ||| |||||| | | ||| ||||| | ||||| || || || | ||| | Sbjct 13196 TGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACAT 13255 Query 75919 ATCGTATTGTAGAATTCCGT----TGCTAGCATATGATCCATTATATGTTTCGTAAGTCC 75974 ||| ||||| | ||| || | |||| || ||||| | || ||||| || | | Sbjct 13256 ATCATATTGCAAAATACCTTGGGATGCTGGC----GATCCTTCGTAGGTTTCATATGGAC 13311 Query 75975 CGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAA 76034 | || | || || | |||||| || |||| || | | ||| || ||||| || | Sbjct 13312 CTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAATA 13371 Query 76035 TCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA-ATAAAT 76093 | || | ||||| |||| || | | | ||||| || | | ||| ||| | ||| Sbjct 13372 TTTTAATGTTAAGCTCTTTTGCATGAGGTGAGTCAAATGGC-ATTCTAAGAGATAAAAAG 13430 Query 76094 GCATCTGCTAGTCCC--------------------------------------------T 76109 ||||| || ||||| | Sbjct 13431 GCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCTT 13490 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 |||| ||||| ||||| || | |||||| ||||| || | ||||||| | ||| | Sbjct 13491 GAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGAT 13550 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 ||||||||| ||| ||||| ||||| | |||||| | || ||||| || || | || Sbjct 13551 AATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGTA 13610 Query 76230 GTTTGAGAAAATCAAATTTTCCATCTATCACAAACATAT--TAAGAGCTATAGATGCTAG 76287 | || |||||||| | | || | | ||| || | | ||| ||| ||| ||| || Sbjct 13611 GCTTTTGAAAATCATAAATGCCTT-TGTCAATAAAAGTTGGTAA-AGCAATACTTGCAAG 13668 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 ||| ||||| ||||| |||| | | | ||| | ||||| || ||||||| |||| Sbjct 13669 ATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAGA 13728 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACATGAGTCCTTATAAA 76406 ||| |||||||| |||||||| | || || | ||| | || |||| || ||||||| Sbjct 13729 ACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAAA 13787 Query 76407 GAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA- 76465 | | ||| ||| | || || || |||||| ||| | ||| | | ||| | | ||| Sbjct 13788 GCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTCTGT 13846 Query 76466 GCTTTTATTATA-GATTTG--------TATCGCTTCTCTCTTTCATAT------------ 76504 ||||| | || || ||| | | ||| | | |||||||| Sbjct 13847 GCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTTA 13906 Query 76505 --------------TG-TGTATATAACCGT-----------TCAAATTCATCTCCCCAAA 76538 || | ||||||| || ||||| || ||||| ||| Sbjct 13907 AAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAAA 13966 Query 76539 CATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAA 76598 |||| || | |||||| ||| |||||||| | || ||| || || | | | | Sbjct 13967 CATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCCA 14026 Query 76599 CCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT-AAATAGATCTCGGGTTCTACGT 76657 | ||||||||||| | ||||||||||||| ||| || ||| ||||||| | || | | Sbjct 14027 CTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAATT 14085 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| || || ||| || |||||| | ||| || | ||||| | |||||||||| Sbjct 14086 TCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGGT 14145 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 |||| ||| || || | | || || || || || || || || || | ||||| ||| Sbjct 14146 TCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGCA 14205 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 || || || | || || | ||| |||||||| || |||||||||||||| ||||| | | Sbjct 14206 GTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGCA 14265 Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897 |||||||| ||| ||||||||| | || | || || ||||||||||| ||||| Sbjct 14266 ATATAACTCCCAGTAGCACGAATACAATGAACATTGAGCCCAATTCCTCCTGCTGTTTTA 14325 Query 76898 GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATG 76957 || | ||||| ||| | ||| ||||| || || || || |||||| |||| Sbjct 14326 CTAATCATGGCACATGTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTTCATA 14385 Query 76958 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGA 77017 | | || || ||| || | |||| ||| ||||||||||||||| |||||||| Sbjct 14386 GTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGTAGGT 14445 Query 77018 GATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA 77077 || ||||| || | ||||| |||| | ||||| |||||||||||| || ||| | | Sbjct 14446 GAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTCAACA 14505 Query 77078 TCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTC 77137 || ||| || || || || |||||||| | |||||| || |||| |||| || | Sbjct 14506 TCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGCAACC 14565 Query 77138 TTATTATTTATTTTCAACAAGTATGATTT--TTCCAAAGTTTTAAAACCAAAATAGTTGT 77195 || | ||| | || ||| || | || || || |||||||| ||||||||||| | Sbjct 14566 TT-TCCATTAATACGAAGAAG-ATAACTTCGCTCTAATGTTTTAAATCCAAAATAGTTAT 14623 Query 77196 ATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAA 77255 ||| ||| || | ||||| ||||| | | ||||| | || | | | || Sbjct 14624 ATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTACTG 14683 Query 77256 TATC-CATGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAG 77314 | || ||| | | |||||| ||||| ||| | | |||| | |||||||||||| Sbjct 14684 TTTCATATGTTTTTAG-AGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACATAG 14742 Query 77315 TTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGAT 77374 | | |||| || || || | ||||| |||||| |||| |||||| ||||| ||| Sbjct 14743 TGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTAGAT 14802 Query 77375 ACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGT 77416 || || || | || || | ||| ||||| || ||||| ||| Sbjct 14803 ACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931209618560