Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq195 95.1 3e-14 seq220 89.7 1e-12 >seq195 Length=28285 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 115617 GCAAGGGAGATTTTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCA 115676 ||||| || |||| |||| | | |||| | |||| | |||||||| ||||| | ||| Sbjct 14078 GCAAGAGATCTTTTTTATGGCTTATGGATACCTGACTTATTTATGAAACGAGTGGAAGCA 14019 Query 115677 AACGGAATGTGGAGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGT 115736 || | |||||| | |||||||| || |||||||||||||| || |||||||| || Sbjct 14018 AATCAAGATTGGAGCTTATTTTGTCCGAACGAAGCCCCTGGTCTAGACGATGTTTACGGA 13959 Query 115737 CCAGAGTTTGAG 115748 |||||||||| Sbjct 13958 GAAGAGTTTGAG 13947 >seq220 Length=17533 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || || ||||| ||||| ||||| || | || || | || ||||| Sbjct 2296 ACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCGTCTTCC 2237 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || ||||| || || | | ||| ||||||| | || || ||||| |||||| Sbjct 2236 AGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 2177 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | ||||| || ||||| || || || ||||| Sbjct 2176 ATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATCGTTTTT 2117 Query 152076 CCCGTGAGAGTCTTCAC 152092 || || ||||| || || Sbjct 2116 CCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815507568218