Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq220 150 4e-31 >seq220 Length=17533 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| | ||| ||||| | || |||||| ||||| |||||||||| Sbjct 2315 ACCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGA 2256 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| || || || || || |||||||| || ||||| |||||||| || Sbjct 2255 TAGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGG 2196 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||||||||| || ||||||||| || | ||||| || || || | ||| | Sbjct 2195 AATGCCCTCCTTGTCTTGAAT-TTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCA 2137 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||| || || ||||| || || || | ||| || || Sbjct 2136 CTTCTAGTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734398738132