Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq187 282 4e-71 seq263 89.7 5e-13 >seq187 Length=9730 Score = 282 bits (312), Expect = 4e-71 Identities = 222/263 (84%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 8345 CTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 || ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| || Sbjct 7175 CTAACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTGC 7116 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| Sbjct 7115 CTCCTGGGTTCAAGCTGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGGCTACAGGCTTG 7056 Query 8465 AGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||| || ||||| |||||||| |||||||||||| ||||||||||| ||||| Sbjct 7055 TGCCACCATTCCCGGCTAATTTTTTGTAATTTTAGTAGAGACGGGGTTTCACCAGGTTGG 6996 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 |||||||||| | |||||||||||||| |||||| || ||||| ||||| | ||||| Sbjct 6995 CCAGGCTGGTTTTTAACTCCTGACCTCAAATGATCCGCCCGCCTCAGCCTCTC-AAGTGT 6937 Query 8584 TGGGATTACAGGCATGAGCCACC 8606 || ||||||| |||| |||| Sbjct 6936 TGAAATTACAGATGTGAGGCACC 6914 Score = 212 bits (234), Expect = 7e-50 Identities = 211/271 (78%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||| |||||||||||||| ||||| | | | |||||||||| || || Sbjct 4181 CTCTGTCACCCAGACTGGAGTGCAGTGGTGAGATCTTGGGTTATTGCAACCTCCACCCCC 4122 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 ||||||||| |||||| ||| ||||||||| ||||||||||| |||| ||| | | Sbjct 4121 TAGGTTCAAGCGATTCTCATGCGTCAGCCTCCCAAGTAGCTGGGACTACAAGCACA---C 4065 Query 8469 ACCACGCCAA---GCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCC 8525 ||||| ||| |||||||||||| ||||||||||| | ||||| ||||| || || Sbjct 4064 ACCAC--CAATTGGCTAATTTTTGTGTTTTTAGTAGATATGAGGTTTTGCCATGGTGCCC 4007 Query 8526 AGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTG 8585 | ||||| | ||||||| |||| ||||| |||| ||||||||||||||| ||||| Sbjct 4006 ATAGTGGTCGCAAACTCCTCGTCTCAAGTGATTCACCCACCTCGGCCTCCCAAAATGCTG 3947 Query 8586 GGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||||| |||| || | | |||| || Sbjct 3946 GGATTACAGGTTTGAGTCAACACACCTGACC 3916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/287 (68%), Gaps = 20/287 (7%) Strand=Plus/Plus Query 8364 TGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATT 8423 ||||||||||| || ||||| | |||| ||| ||| |||| || | |||| || Sbjct 4919 TGGAGTGCAGTAGCGTGATCATAGTTCACCGCAGCCTAGAACTCCTGGCT-CAAGTGATC 4977 Query 8424 CTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAA 8483 ||| || |||| ||||| |||||| || |||| | | | ||| || ||||| Sbjct 4978 CTC-TGTCTCAATATCCAGCATAGCTGAGACAACAGTTTGGAACTATCACACCTGGCTAA 5036 Query 8484 TT-TTTGTA----------TTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGG 8532 | ||| || ||||| ||| | | |||| |||| |||||| | ||||||| Sbjct 5037 ATGTTTTTAATGCTTCAAGTTTTTTGTATAAATGGGGTCTCACTATGTTGACAAGGCTGG 5096 Query 8533 TCTCGAACTCCTGACCTCATGTGATCC-ACCTGCCTCGGCCTCCCAAAGTGCTGGGATTA 8591 | || || ||||| ||||| | || | | || |||| ||| ||| ||| ||| || Sbjct 5097 TATCAAATTCCTGGCCTCAAGCAATTCTATCT-CCTCAGCCAATCAATATGCCAGGAATA 5155 Query 8592 CAGGCATGAGCCACCGCGCCTGGC-----CCTTTAAAAAGTTTTCTT 8633 |||||||||| ||||| ||||||| |||||| || ||||| || Sbjct 5156 CAGGCATGAGACACCGTGCCTGGCCAGCGCCTTTATAATGTTTTATT 5202 >seq263 Length=6764 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 8345 CTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 |||||||| | ||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 1487 CTCACTCTCAT--CCAGGCTGGAGTGCAGTGGTGTGATCATAGCTCACTGCAATCTCAAA 1544 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 |||| || ||| || || |||| ||||||| ||| || ||||||||| ||| ||| Sbjct 1545 CTCCTGGCCTCAGGCAATCCTCCCACCTCAGCTTCCTGAATAGCTGGGACCACAAGCA 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485666341200