Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq132 161 2e-34 seq220 136 1e-26 >seq132 Length=47203 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 |||||||| || |||||||||||||| || | |||||||| |||||||| || || Sbjct 38830 GTGAAAACACTTACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCAGACACAATTGAC 38771 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| |||||||| || |||||||| || || ||||| || ||||| || ||| Sbjct 38770 AATGTCAAAAGCAAGATTCAAGATAAAGAAGGGATTCCACCGGATCAACAACGGCTAATC 38711 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || ||||| ||| | || |||||||| || ||| | ||||| || |||| |||||| Sbjct 38710 TTTGCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGAAAGAA 38651 Query 178113 TCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || ||||| ||| | ||| Sbjct 38650 TCGACTCTTCACCTTGTATTGCGGCTC 38624 >seq220 Length=17533 Score = 136 bits (150), Expect = 1e-26 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || |||||||| |||||||||||||| || || || |||||| ||||| || ||||| Sbjct 2100 GTAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGAC 2159 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || ||| || ||||| ||||| || || || || |||||||| || || | || Sbjct 2160 AATGTTAAAAGCAAAATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATT 2219 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || ||||| || ||||| ||||| || |||| || | || || || |||| |||||| Sbjct 2220 TTTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGAA 2279 Query 178113 TCAACACTGCATCTTGTTTT 178132 || || || |||||||| || Sbjct 2280 TCGACCCTTCATCTTGTATT 2299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725678635452