Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq23 111 3e-19
>seq23
Length=690853
Score = 111 bits (122), Expect = 3e-19
Identities = 566/891 (64%), Gaps = 21/891 (2%)
Strand=Plus/Plus
Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818
||||| ||| | |||| ||| || ||| | |||||||| ||||| | ||| | ||||||
Sbjct 88366 TTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGG 88425
Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876
||| | ||||| || ||||| | | ||| | ||||||| | || ||||| |
Sbjct 88426 ACCGCCGAGGAGATTGACCTCTCCAAG--GACCTGCACGACTGGGAGAACAAGCTCAACG 88483
Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936
|||||||||| |||||| ||| |||| | ||| || || | | ||||| ||||
Sbjct 88484 ACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTG 88543
Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTG--GAAGTAACGGTTCCAGAGGCACGGCA 229994
| | |||||| ||| | | | || | ||||| || |||||||||||
Sbjct 88544 TCAATGAAAATTTGCT--CGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGCACGATG 88601
Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054
|| |||| | ||| | | ||| ||||| || || || | || || ||
Sbjct 88602 CTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCTCAT 88661
Query 230055 CGACGCGCTTATTTCCGACGAGCAAG---AACGGAACGAGCTTTTTGATGCCATTGAAAA 230111
|| | || | | || |||| ||||| | | || || ||||| || || |
Sbjct 88662 TGATACATACAT---CAAGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGAC 88718
Query 230112 CATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATC 230171
|||||| | | | || ||| | ||||| | | ||| | | | | | ||
Sbjct 88719 AATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGACGACGAGTC 88778
Query 230172 G---TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228
||||| |||||| || || | | ||| || || || | || || ||
Sbjct 88779 TACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGCTC 88838
Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288
||| | ||||||||||||| ||| ||| | ||||| || ||| | ||
Sbjct 88839 GTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGCAA 88898
Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAA 230348
||| ||||| ||| |||||||||||||| | | |||| | || ||| | |
Sbjct 88899 TGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTTTAGTCA 88958
Query 230349 GCTCCAGAACAAGC-TACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407
| ||||||||| | | | | | | ||| || | |||||||| ||||| ||||| |
Sbjct 88959 CTTGAAGAACAAGCCTTCAAAGCAACA-GGTACAAGACATCATTACTGAAGCTGTTGAGA 89017
Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAA 230466
|| ||| ||| | ||| | | ||||| | ||||||||| || || || |
Sbjct 89018 TTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCC-CCTTATTGGGTATCAATGCAAAG 89076
Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526
|| ||| | ||||||| ||||| || || || || | | || | ||||| || |
Sbjct 89077 CTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTTGGCAACAAA 89136
Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586
|| | || || | | || || |||| ||||||||| |||||| || || |||
Sbjct 89137 AAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCACTCGCTGGCAAG 89196
Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||||||||| || ||||||||| ||||||| || | | | ||||| |||
Sbjct 89197 ACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAAAAGGCGGGTGTCATG 89247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823403651720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |