Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq23 111 3e-19 >seq23 Length=690853 Score = 111 bits (122), Expect = 3e-19 Identities = 566/891 (64%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||| | |||| ||| || ||| | |||||||| ||||| | ||| | |||||| Sbjct 88366 TTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGG 88425 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| | ||||| || ||||| | | ||| | ||||||| | || ||||| | Sbjct 88426 ACCGCCGAGGAGATTGACCTCTCCAAG--GACCTGCACGACTGGGAGAACAAGCTCAACG 88483 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 |||||||||| |||||| ||| |||| | ||| || || | | ||||| |||| Sbjct 88484 ACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTG 88543 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTG--GAAGTAACGGTTCCAGAGGCACGGCA 229994 | | |||||| ||| | | | || | ||||| || ||||||||||| Sbjct 88544 TCAATGAAAATTTGCT--CGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGCACGATG 88601 Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054 || |||| | ||| | | ||| ||||| || || || | || || || Sbjct 88602 CTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCTCAT 88661 Query 230055 CGACGCGCTTATTTCCGACGAGCAAG---AACGGAACGAGCTTTTTGATGCCATTGAAAA 230111 || | || | | || |||| ||||| | | || || ||||| || || | Sbjct 88662 TGATACATACAT---CAAGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGAC 88718 Query 230112 CATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATC 230171 |||||| | | | || ||| | ||||| | | ||| | | | | | || Sbjct 88719 AATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGACGACGAGTC 88778 Query 230172 G---TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 ||||| |||||| || || | | ||| || || || | || || || Sbjct 88779 TACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGCTC 88838 Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 ||| | ||||||||||||| ||| ||| | ||||| || ||| | || Sbjct 88839 GTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGCAA 88898 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAA 230348 ||| ||||| ||| |||||||||||||| | | |||| | || ||| | | Sbjct 88899 TGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTTTAGTCA 88958 Query 230349 GCTCCAGAACAAGC-TACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 | ||||||||| | | | | | | ||| || | |||||||| ||||| ||||| | Sbjct 88959 CTTGAAGAACAAGCCTTCAAAGCAACA-GGTACAAGACATCATTACTGAAGCTGTTGAGA 89017 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAA 230466 || ||| ||| | ||| | | ||||| | ||||||||| || || || | Sbjct 89018 TTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCC-CCTTATTGGGTATCAATGCAAAG 89076 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||| ||||| || || || || | | || | ||||| || | Sbjct 89077 CTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTTGGCAACAAA 89136 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || | || || | | || || |||| ||||||||| |||||| || || ||| Sbjct 89137 AAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCACTCGCTGGCAAG 89196 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||||||| || ||||||||| ||||||| || | | | ||||| ||| Sbjct 89197 ACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAAAAGGCGGGTGTCATG 89247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823403651720