Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq43 154 2e-32 seq23 138 1e-27 >seq43 Length=605699 Score = 154 bits (170), Expect = 2e-32 Identities = 566/872 (65%), Gaps = 22/872 (3%) Strand=Plus/Minus Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 ||| ||||| || || ||||| || || || ||||||| | ||| || | | || Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||| || || | || || ||||||||||| || | || | || || ||| ||| Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || || ||||| || || ||||| || | || || ||| | || | || | ||| || Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT---CTT-TCGTATA 53936 | ||| | | ||||| || | | | || | || | ||| ||||| Sbjct 33897 GTACCACAGCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTACT 33842 Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 || ||||| |||||| || || || | || | || || ||||||||||| | | Sbjct 33841 TGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGG 33782 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 | ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| |||| Sbjct 33781 GGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCC 33722 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 | ||||| ||| || | || | | | || || || || ||||| | Sbjct 33721 AGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAG 33663 Query 54116 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || ||||| |||| | || || | ||||| || || | ||| || | | | || || Sbjct 33662 TCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGG 33604 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || ||||| || || || || | || || || ||||| || | || | || ||| || Sbjct 33603 ACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGG 33544 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 54292 || || || ||||||| |||||| || |||| || || || || | ||||| || | Sbjct 33543 GATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCA 33484 Query 54293 TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 54352 | ||||| |||| || || || || | |||||||| | || || |||||| | Sbjct 33483 GTGGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGAG 33427 Query 54353 -GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG--CTAGAC 54409 || || |||||||| || || |||||| |||| | | || || || | ||| Sbjct 33426 TGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAG 33367 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 | ||| | | || || || || || | |||||| || ||||| || || || Sbjct 33366 TTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTG 33309 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529 ||| | || ||||| ||||| || || || || || |||||| || || Sbjct 33308 GAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACA 33249 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 ||||||||||| | ||||||||| ||||| || Sbjct 33248 GCGACACGCATGATCATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 138 bits (152), Expect = 1e-27 Identities = 393/591 (66%), Gaps = 25/591 (4%) Strand=Plus/Minus Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 |||||| | ||| |||||||| ||| ||||||||||| | | || | || ||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243 ||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-----AC- 24297 |||| || || ||||| || || || ||||| || | ||| | | || | || Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 24298 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 || || ||| || ||||| | ||||| || || || | || | || || ||| Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| || |||| ||||| | | || | || || | ||||||||||| Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATTTGAAATCCGTAGAAA 24473 | || || | || || || ||||||| | ||| || || || || ||||| Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602 Query 24474 CATCTAGCCTC-GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 |||| ||||| |||| | || ||||| | | || || || ||||||||||| || Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 24591 || || |||||||| ||||| || || | || || || || | |||||| | Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483 Query 24592 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 24648 || | || || || ||| || | | || || || | || | || || | |||| Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424 Query 24649 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA-TTGA 24698 | || ||||| ||||||||||| ||||| | ||| || || ||||| |||| Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGA 88373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721273453120