Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq43 154 2e-32
seq23 138 1e-27
>seq43
Length=605699
Score = 154 bits (170), Expect = 2e-32
Identities = 566/872 (65%), Gaps = 22/872 (3%)
Strand=Plus/Minus
Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760
||| ||||| || || ||||| || || || ||||||| | ||| || | | ||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820
||| || || | || || ||||||||||| || | || | || || ||| |||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880
|| || ||||| || || ||||| || | || || ||| | || | || | ||| ||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT---CTT-TCGTATA 53936
| ||| | | ||||| || | | | || | || | ||| |||||
Sbjct 33897 GTACCACAGCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTACT 33842
Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996
|| ||||| |||||| || || || | || | || || ||||||||||| | |
Sbjct 33841 TGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGG 33782
Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056
| ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| ||||
Sbjct 33781 GGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCC 33722
Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
| ||||| ||| || | || | | | || || || || ||||| |
Sbjct 33721 AGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAG 33663
Query 54116 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174
|| ||||| |||| | || || | ||||| || || | ||| || | | | || ||
Sbjct 33662 TCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGG 33604
Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234
|| ||||| || || || || | || || || ||||| || | || | || ||| ||
Sbjct 33603 ACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGG 33544
Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 54292
|| || || ||||||| |||||| || |||| || || || || | ||||| || |
Sbjct 33543 GATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCA 33484
Query 54293 TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 54352
| ||||| |||| || || || || | |||||||| | || || |||||| |
Sbjct 33483 GTGGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGAG 33427
Query 54353 -GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG--CTAGAC 54409
|| || |||||||| || || |||||| |||| | | || || || | |||
Sbjct 33426 TGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAG 33367
Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469
| ||| | | || || || || || | |||||| || ||||| || || ||
Sbjct 33366 TTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTG 33309
Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529
||| | || ||||| ||||| || || || || || |||||| || ||
Sbjct 33308 GAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACA 33249
Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTC 54561
||||||||||| | ||||||||| ||||| ||
Sbjct 33248 GCGACACGCATGATCATGTGCTGCGGTCTCTC 33217
>seq23
Length=690853
Score = 138 bits (152), Expect = 1e-27
Identities = 393/591 (66%), Gaps = 25/591 (4%)
Strand=Plus/Minus
Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183
|||||| | ||| |||||||| ||| ||||||||||| | | || | || |||
Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895
Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243
||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || |
Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835
Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-----AC- 24297
|||| || || ||||| || || || ||||| || | ||| | | || | ||
Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775
Query 24298 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356
|| || ||| || ||||| | ||||| || || || | || | || || |||
Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719
Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416
||||| || |||| ||||| | | || | || || | |||||||||||
Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659
Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATTTGAAATCCGTAGAAA 24473
| || || | || || || ||||||| | ||| || || || || |||||
Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602
Query 24474 CATCTAGCCTC-GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532
|||| ||||| |||| | || ||||| | | || || || ||||||||||| ||
Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543
Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 24591
|| || |||||||| ||||| || || | || || || || | |||||| |
Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483
Query 24592 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 24648
|| | || || || ||| || | | || || || | || | || || | ||||
Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424
Query 24649 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA-TTGA 24698
| || ||||| ||||||||||| ||||| | ||| || || ||||| ||||
Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGA 88373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721273453120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |