Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq43 104 2e-17
seq40 104 2e-17
>seq43
Length=605699
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||| | || | ||| |||||||| || ||||| ||||| |||
Sbjct 450880 CCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCC 450939
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | ||||||| ||||| ||||| ||| |||| || | ||||||||| ||
Sbjct 450940 AAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGG 450999
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| || || | | | | || || | |||
Sbjct 451000 ATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACC 451059
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||||||||||| || || ||||| ||||| || ||||||||
Sbjct 451060 TCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106
>seq40
Length=667070
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| || | || | ||| |||||||| || ||||| ||||| ||
Sbjct 1504 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 1445
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||| ||||| ||||| ||| | || || | ||||||||| ||
Sbjct 1444 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGG 1385
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| ||| || || || | | ||| || || || |||
Sbjct 1384 ATGCCTTCCTTGTCCTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACC 1325
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | || ||||| || ||||||||
Sbjct 1324 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422258973563504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |