Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq23 300 2e-76 seq40 147 2e-30 seq43 113 5e-20 >seq23 Length=690853 Score = 300 bits (332), Expect = 2e-76 Identities = 431/607 (71%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || ||||| | |||||||| | || | || || |||| |||||||||||||| || Sbjct 88354 CGCTTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAA 88413 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || || |||||||||| ||||||| | ||||| ||||||||| | |||||||||| | Sbjct 88414 GCATCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAAC 88473 Query 116723 TTG---AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGC 116779 | |||||| |||| ||| |||||| ||||| || || || || |||||||| Sbjct 88474 AAGCTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGT 88533 Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 || ||||| ||||| || ||| || ||||||||||| | | || || || || | ||| Sbjct 88534 GATGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAG 88593 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCG 116899 || || |||||||| ||||| |||||| ||| ||| | ||||| || | || || Sbjct 88594 GCACGATGCTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCC 88653 Query 116900 ACCCTCATCGACACGTACGT--------GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 |||||| || || ||| | |||| || | ||| || | || Sbjct 88654 CTCCTCATTGATACATACATCAAGGAACAAGCTCAACG-----GCAGCACC---TCTTCG 88705 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 | || |||||||| || |||||| |||| | || || || ||||| ||||||||||| | Sbjct 88706 ATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTG 88765 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | | ||| | |||| | ||| || ||||| || || || |||||||| ||| Sbjct 88766 CAGACGACGAGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCT 88825 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 | || || ||| |||||| |||| |||||||||||||| || || |||||||| || | Sbjct 88826 TTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGAC 88885 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || || ||||| ||||||||||| | ||||||||||| || || || |||||| Sbjct 88886 TCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTC 88945 Query 117192 TGCTGTT 117198 | |||| Sbjct 88946 TCTTGTT 88952 >seq40 Length=667070 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| ||||||||| |||| ||||| || | Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| ||||| | ||||| || |||||||| | |||||| Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1397 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 1398 CAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAAC 1457 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 1458 ATCCAGAAGGAGTCGACTCTCCACCTCGT 1486 >seq43 Length=605699 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||| || |||| |||||| | | Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| |||||||| || | ||||| Sbjct 450818 GACACCATTGACAACG-TCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCA 450760 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | || ||||| ||||| || |||| ||||| || |||||||| Sbjct 450759 GCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAA 450700 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || || || ||| Sbjct 450699 TATCCAGAAGGAGTCAACTCTCCACCTTGTG 450669 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || |||||||| |||| || || | | Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| || || || || | ||||| Sbjct 450590 GACACCATTGACAACG-TCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCA 450532 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || || | ||||| | ||||||||| Sbjct 450531 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAA 450472 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || |||| | |||||||| Sbjct 450471 CATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCG 450436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || || || || || || || ||||| ||||| ||| | || || ||| || | |||| | Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | ||||| ||||||| ||||| || || || || |||||||||| || Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 | || | ||| || || ||||| || || | ||||| || ||||||||||||||| Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377 Query 40876 AAGGAGGCCACGCTGCATCTAGTG 40899 |||||| | || || || || ||| Sbjct 451376 AAGGAGTCAACTCTCCACCTTGTG 451353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | || || || ||||| || | || || || | | Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || || ||||| | |||||| Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | || ||||| ||||| || |||| ||||| | ||||||||| Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || || || ||| Sbjct 450926 ATCCAGAAGGAGTCAACTCTCCACCTTGTG 450897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218916629440