Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq23 300 2e-76
seq40 147 2e-30
seq43 113 5e-20
>seq23
Length=690853
Score = 300 bits (332), Expect = 2e-76
Identities = 431/607 (71%), Gaps = 19/607 (3%)
Strand=Plus/Plus
Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662
|| ||||| | |||||||| | || | || || |||| |||||||||||||| ||
Sbjct 88354 CGCTTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAA 88413
Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722
|| || |||||||||| ||||||| | ||||| ||||||||| | |||||||||| |
Sbjct 88414 GCATCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAAC 88473
Query 116723 TTG---AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGC 116779
| |||||| |||| ||| |||||| ||||| || || || || ||||||||
Sbjct 88474 AAGCTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGT 88533
Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839
|| ||||| ||||| || ||| || ||||||||||| | | || || || || | |||
Sbjct 88534 GATGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAG 88593
Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCG 116899
|| || |||||||| ||||| |||||| ||| ||| | ||||| || | || ||
Sbjct 88594 GCACGATGCTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCC 88653
Query 116900 ACCCTCATCGACACGTACGT--------GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951
|||||| || || ||| | |||| || | ||| || | ||
Sbjct 88654 CTCCTCATTGATACATACATCAAGGAACAAGCTCAACG-----GCAGCACC---TCTTCG 88705
Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011
| || |||||||| || |||||| |||| | || || || ||||| ||||||||||| |
Sbjct 88706 ATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTG 88765
Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071
| | | ||| | |||| | ||| || ||||| || || || |||||||| |||
Sbjct 88766 CAGACGACGAGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCT 88825
Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131
| || || ||| |||||| |||| |||||||||||||| || || |||||||| || |
Sbjct 88826 TTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGAC 88885
Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191
| || || ||||| ||||||||||| | ||||||||||| || || || ||||||
Sbjct 88886 TCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTC 88945
Query 117192 TGCTGTT 117198
| ||||
Sbjct 88946 TCTTGTT 88952
>seq40
Length=667070
Score = 147 bits (162), Expect = 2e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||||||||| ||||||||| |||| ||||| || |
Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| ||||| | ||||| || |||||||| | ||||||
Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1397
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| || ||||| ||||| || |||| ||||| ||| |||||||||
Sbjct 1398 CAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAAC 1457
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || || || ||
Sbjct 1458 ATCCAGAAGGAGTCGACTCTCCACCTCGT 1486
>seq43
Length=605699
Score = 113 bits (124), Expect = 5e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || ||||| || |||| |||||| | |
Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| |||||||| || | |||||
Sbjct 450818 GACACCATTGACAACG-TCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCA 450760
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | || ||||| ||||| || |||| ||||| || ||||||||
Sbjct 450759 GCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAA 450700
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||| | || || || || |||
Sbjct 450699 TATCCAGAAGGAGTCAACTCTCCACCTTGTG 450669
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || |||||||| |||| || || | |
Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| || || || || | |||||
Sbjct 450590 GACACCATTGACAACG-TCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCA 450532
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| || || || ||||| || || | ||||| | |||||||||
Sbjct 450531 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAA 450472
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| ||||||||| | || |||| | ||||||||
Sbjct 450471 CATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCG 450436
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
|| || || || || || || ||||| ||||| ||| | || || ||| || | |||| |
Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497
Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | | ||||| ||||||| ||||| || || || || |||||||||| ||
Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
| || | ||| || || ||||| || || | ||||| || |||||||||||||||
Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377
Query 40876 AAGGAGGCCACGCTGCATCTAGTG 40899
|||||| | || || || || |||
Sbjct 451376 AAGGAGTCAACTCTCCACCTTGTG 451353
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||| | || || || ||||| || | || || || | |
Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| || || ||||| | ||||||
Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | || ||||| ||||| || |||| ||||| | |||||||||
Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||| | || || || || |||
Sbjct 450926 ATCCAGAAGGAGTCAACTCTCCACCTTGTG 450897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218916629440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |