Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq43 131 2e-25 seq40 122 1e-22 >seq43 Length=605699 Score = 131 bits (144), Expect = 2e-25 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || |||||||| | | |||||||||||| |||||||| |||||| ||||| ||||| Sbjct 450418 TACTGTCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAG 450477 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || |||| ||| || | || || |||||||| ||||| || ||||| ||||||||||| Sbjct 450478 TCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCA 450537 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCG 43128 | || | | ||||||| | ||| | || | |||| ||| | | | ||||| | Sbjct 450538 GGTGGAATACCTTCCTTGT-CTTGAATCTTGCTCTTGA-CGTTGTCAATGGTGTCTGATG 450595 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||| |||||||| || || || || ||||| || || |||||||| Sbjct 450596 ACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| || |||| ||| || | || || |||||||| ||||| || Sbjct 451143 CTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAA 451202 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||| |||||||| || | || | || |||||||||| ||| | || | |||| Sbjct 451203 AATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACAT 451261 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || |||| |||||||| || || || || ||||| | Sbjct 451262 TGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGA 451321 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 451322 CAAAGATCTGCAT 451334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || || || |||| || |||||||| ||||| || Sbjct 450687 CTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 450746 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||| ||||||||||| | || | || |||||||| | ||| | || | |||| || Sbjct 450747 AATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGT-CTTGAATCTTGCTCTTGA-CG 450804 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| ||||| || |||| || ||||| || || || | ||||| Sbjct 450805 TTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTA 450864 Query 43170 ACAAAGATTTGCAT 43183 || || || ||||| Sbjct 450865 ACGAAAATCTGCAT 450878 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || ||||||||||||||||| Sbjct 451371 CTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAA 451430 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||| | || | | ||||||||| ||| |||| | |||| Sbjct 451431 AATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCC-TGAATTTTCGACTTGACAT 451489 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||||| || || | || ||||| ||||| || || ||||| | Sbjct 451490 TGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGA 451549 Query 43171 CAAAGAT 43177 ||||||| Sbjct 451550 CAAAGAT 451556 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || |||| ||| || |||| || |||||||| ||||| || Sbjct 450915 CTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 450974 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||| ||| || |||| | Sbjct 450975 AATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTTGACATT 451034 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || || | || ||||| || || || | |||||| || Sbjct 451035 GTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGAC 451094 Query 43172 AAAGATTTGCAT 43183 || |||||||| Sbjct 451095 GAAAATTTGCAT 451106 >seq40 Length=667070 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| ||||| || Sbjct 1469 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 1410 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || ||||||||| |||||| |||| | Sbjct 1409 GATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTGACATT 1350 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||||| |||||||| || ||||| || Sbjct 1349 GTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1290 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 1289 GAAGATTTGCAT 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817285500320