Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq43 104 2e-17 seq40 104 2e-17 >seq43 Length=605699 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | ||| || ||||| || |||||||| | Sbjct 450652 CCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCA 450711 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| || |||||||| ||||||||||| || Sbjct 450712 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGA 450771 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | |||||||| Sbjct 450772 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACT 450831 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || || || | ||| || || || |||||||| Sbjct 450832 TCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||||| || || | || || | ||||||||| || ||| Sbjct 451144 TCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAA 451203 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || || | || ||||||||| ||||| ||| | || | Sbjct 451204 ATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTG 451263 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || || | |||||||| || || || ||||| || ||| Sbjct 451264 TCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGACA 451323 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 451324 AAGATCTGCAT 451334 >seq40 Length=667070 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| | ||| ||| |||| Sbjct 1489 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 1430 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| || || ||||| ||||||||||| | |||| | || |||||||| Sbjct 1429 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTC 1371 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || ||| | || | | || | || | || ||||| || | |||||||| Sbjct 1370 CTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGT 1311 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || || || ||||| |||||| Sbjct 1310 CTTGCCCGTGAGGGTCTTGACGAAGATTTGCATC 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071826752640