Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq43 98.7 8e-16 >seq43 Length=605699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || |||||||||||||||||||||| || |||| | || Sbjct 450439 AACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATCC 450498 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| || || || | ||||| ||||| || || | ||| |||||||| Sbjct 450499 TCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCT 450558 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| ||||| | || || ||| Sbjct 450559 TGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTC 450618 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| || || |||||||| Sbjct 450619 TTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| |||| | || || || || || || ||||| Sbjct 451371 CTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAA 451430 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| || || | || ||||||||| |||||| ||| || Sbjct 451431 AATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATTTTCGACTTGACATT 451490 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||| | |||||| |||||||| || || ||||| || Sbjct 451491 GTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGAC 451550 Query 45325 AAAGAT 45330 |||||| Sbjct 451551 AAAGAT 451556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074988140924