Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq43 358 6e-94 seq23 178 1e-39 seq40 116 3e-21 >seq43 Length=605699 Score = 358 bits (396), Expect = 6e-94 Identities = 1167/1800 (65%), Gaps = 48/1800 (3%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 |||||| || || || || |||| || ||| | |||| || || || |||||||| Sbjct 34995 CTTGTCAACAGTGAATTGAATGGGTGCTGAGGCAGCCATGGTACGCAGGTAGTACATGCC 34936 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| ||||||| | ||||| || ||||| || | ||| || | |||| Sbjct 34935 CGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTAATTTTACCGAATGTCGG 34876 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | | | || |||| || || |||||| ||||| || || || || || || Sbjct 34875 CGCCTTGAGATGCAAGTTGAGGGATTGCGACTGATCAATAAAGGCACCACGGTCAGCAGC 34816 Query 22285 CATATTTATCAATGTACGCATCGACATT--TCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| |||| || | || | |||||||| |||||||| || | || Sbjct 34815 CATATCGATCACC--ACTTTTTGAGAGAGCTCCCATACAGTCTTGTAGAGGGCTTTCGTC 34758 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 ||| || || | ||| | || || || || || | ||||| ||| || Sbjct 34757 TCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGGCAATGATGCGATTCTTC 34698 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || | || ||| | || || | | ||| |||| || | |||||||||| Sbjct 34697 ATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTTGAGCAACCAAGGGTTCACCACC 34638 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || ||||| |||| | ||| || || |||||||||| ||| | || || || || Sbjct 34637 TGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAGCAT 34578 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 |||||| ||||| ||||| | || || || || |||||||| || ||| || ||| Sbjct 34577 TCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCACACAACAGGGAG 34518 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTT-GAGCATCGACCAGTCCCACAGATCGGA 22641 || | | || ||||||| ||| | ||||| |||| ||| ||||||||| || | || Sbjct 34517 TTGCGGATACCATGCTTTGCAATCTG-CTCTTTGAGCGTCGCCCAGTCCCAGAGCTTGGT 34459 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || || ||||| ||||| || || ||||| | || || || || ||| || Sbjct 34458 GGGTGTGACATT---CCACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCTC 34402 Query 22702 GTACGTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760 ||| || ||| ||||| | | || | || || || || || || | || |||| Sbjct 34401 GTAGGTAGAGTATGGACCCTCT-TCTTGTGCCAGCTCACACGAGGCTTCAAGAGCACCGT 34343 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTAC 22816 || || ||||| ||||||| |||||| || ||| ||||| ||| | Sbjct 34342 GGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAG----TCGAAT 34287 Query 22817 GGCATACGCATCAT---CACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 |||| || | | || ||| || || || | ||| || || || | |||||| ||| Sbjct 34286 GGCA---GCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGGT 34230 Query 22874 CGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933 |||| | || || | || || | || || | || ||||| | Sbjct 34229 CGGTGACGCTTGTTGGAACGCTCAGCTTCAATGACTGGGTAGTAGTTGACGTCGATGATC 34170 Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG 22993 |||||||||| | | |||| || | | | |||||||| ||| Sbjct 34169 TTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGTAGACG 34110 Query 22994 ----------CCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATAC 23043 | || ||| | | || || | ||| || ||||| |||||||| || Sbjct 34109 GGTGTTTCTGCGCGCATGT-CGATGAAGGTGGGCAAGGCAATGGAGGCGAGATTGCAGAC 34051 Query 23044 GGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTAT 23103 |||||||| || | || |||||| ||||| |||||||| | ||||| ||||| || Sbjct 34050 AGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCTGCACTTGAT 33991 Query 23104 CGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGG 23163 || || | || ||||||| || || ||||| | |||||||| |||||| | || Sbjct 33990 GGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAGCATGAAGGG 33931 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG 23223 |||||||||| |||| ||||| || || ||||| |||| || | | | Sbjct 33930 ATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGTGCCTTGATG-G 33872 Query 23224 TCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 || || | | |||| | | ||||||||| |||||| || |||||||| | || | Sbjct 33871 TCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTCAAATTCATCGCCAT 33812 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATT 23340 | ||| || || || ||| | || |||||||| |||| | | | || | Sbjct 33811 ACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCAC-TCGCCATTC-TC 33754 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || || || |||| || ||||| || ||||| ||||| ||||||| ||||| ||||| Sbjct 33753 CTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAAGTCGCGTGCGCG 33694 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 ||||| || |||||| |||||| ||| || | ||| | || | ||| || ||||| Sbjct 33693 GACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGATGTCTGCGTGCCA 33634 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||| | ||||| ||||| || || || | ||| ||||| || || ||||| || | Sbjct 33633 TGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACCTTGGTCGACATACCT 33574 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | ||||| || | || |||||||| | || | || Sbjct 33573 GGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGATGTACCATTTGTACC 33514 Query 23581 CGCCAC---ACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637 || | ||| ||| |||| || | | ||| || | || ||| ||||| ||| | Sbjct 33513 GGCAATGTAACTG---CCTGTTGCACGGATGCAGTGGACATTGAGACCAATGCCACCGGC 33457 Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697 | || || ||||| || || ||| || |||||||||||||| ||||| ||| || Sbjct 33456 TGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCGATCGAGTCATC 33397 Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 || | | ||| | ||| || || || | ||| | ||||||||| |||| ||| || Sbjct 33396 CTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCGGCGTTGAAGAG 33337 Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGC 23817 || || ||||| || |||| ||||| || ||||| || || ||||| Sbjct 33336 GGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTT 33277 Query 23818 ATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 |||||||| || || || || || | ||||| ||||| ||||||| || |||||||| Sbjct 33276 TTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATCATGTGCTGCGGTCTCTC 33217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||||||||| || || || ||||| |||| || || | || Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | || || |||||| Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || || | ||| || ||| || ||| Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471 Query 31373 ATTCAAAAAGAATCGAC 31389 ||||| || || || || Sbjct 450470 ATTCAGAAGGAGTCAAC 450454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || || || | || || || | || Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| ||| || | | ||||||||||| | || || ||| Sbjct 451046 GACACCATTGACAATGTCAA---GAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 450990 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || |||||||| ||| | || ||| | ||| || || || Sbjct 450989 CAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTAC 450930 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || || Sbjct 450929 AACATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 450895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| |||| ||||| | || Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || || ||| Sbjct 451274 GACACCATTGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 451215 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | || || | ||| || ||| || || Sbjct 451214 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAT 451155 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || || || Sbjct 451154 ATTCAGAAGGAGTCAACCCTCCACCTTGTCCT 451123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || || || || || |||| || ||| | || Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||| ||| | || || |||||| Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || |||||||| ||| | || ||| Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGAC 450723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 || || || ||||| || || ||||| || || ||| | || |||||| | || |||| Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497 Query 31259 GTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 | || | ||||| || ||| |||||||||||| | || || |||||||||||| Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | || |||||||| || ||| | ||||| Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGA 451408 >seq23 Length=690853 Score = 178 bits (196), Expect = 1e-39 Identities = 401/596 (67%), Gaps = 15/596 (3%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 || ||| | || || || | |||| || |||||| | ||||||||||||||||||||| Sbjct 88357 TTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCA 88416 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC--- 57656 || || ||||||| ||| || | ||||| || ||||| ||| ||| ||||| | Sbjct 88417 TCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAACAAG 88476 Query 57657 CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGAT 57716 ||||| || || | || || ||||| | || || || ||||| ||| Sbjct 88477 CTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGAT 88536 Query 57717 GGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCG 57776 || ||||| || || |||||| |||| | || || | ||||| ||||| | ||||| Sbjct 88537 GGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGCA 88596 Query 57777 AGATGCTTTTACGGATTTCA---AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 ||||||| || || || || |||| |||||| | || ||||| | || || Sbjct 88597 CGATGCTTCTATGGCTTCCAGATCATGGC---GGAAAACATCCACTCAGAGACCTACTCC 88653 Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAG--ACTGTTCAACGCGA 57891 || ||||| ||||| ||| | |||| ||| | || | || || ||| | || | Sbjct 88654 CTCCTCATTGATACATACATCAAGG--AACAAGCTCAACGGCAGCACCTCTTCGATGCAA 88711 Query 57892 TCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950 |||| ||||| |||| | ||| | || ||||| ||| || | ||||| | | Sbjct 88712 TCGAGACAAT-CCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGAC 88770 Query 57951 GCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTT 58010 | | | | || || || | | || | || || || || ||||| || || || || Sbjct 88771 GACGAGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTC 88830 Query 58011 TCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACG 58070 || ||| || || | || |||||| | ||||| || || || ||||| || || || Sbjct 88831 TCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACC 88890 Query 58071 TTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 |||||||| ||| | || || || |||||||||||||| || ||||| || || || Sbjct 88891 TTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCT 88946 >seq40 Length=667070 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1397 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | || ||| || | || || ||| Sbjct 1398 CAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAAC 1457 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||||| || || || || Sbjct 1458 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766154828480