Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq43 165 1e-35 seq23 145 1e-29 >seq43 Length=605699 Score = 165 bits (182), Expect = 1e-35 Identities = 568/871 (65%), Gaps = 20/871 (2%) Strand=Plus/Minus Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 ||| |||| || || ||||| || || || ||||||| | ||| || | | || Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 ||| || || | || || |||||||| || || | || | || || ||| ||| Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || || ||||| || || ||||| ||| | || || ||| | || | || | ||| || Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 63119 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT---CTT-TCGTAT 63173 | ||| | | || | ||||| || | | | || |||| | ||| ||||| Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843 Query 63174 AGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCC 63233 || ||||| ||| || || || || | || | || || | ||||||||| | Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783 Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| ||| Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723 Query 63294 CAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 || ||||| ||| || | || | || | || || || || ||||| | Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664 Query 63353 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63411 || ||||| |||| | || || | ||||| || || | ||| || || | | || | Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605 Query 63412 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63471 | || ||||| || || || || | || || || ||||| || | || | || ||| | Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545 Query 63472 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT-- 63529 | || || ||||| ||| ||||||| ||||||| || || | || | ||||| || Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485 Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589 | | ||||| |||| || || || || | |||||||| | || || |||||| | Sbjct 33484 AGTGGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428 Query 63590 C-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63648 ||||| |||||||| || || ||||| |||| | | || || || || | Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368 Query 63649 TTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63708 ||| | | || || || || || | |||||| || ||||| || || || Sbjct 33367 GTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGG 33308 Query 63709 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63768 ||| | || ||||| |||||||| || || || || |||||| || || | Sbjct 33307 AAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAG 33248 Query 63769 CGACACGCATTAACATGTGCTGAGGTCTTTC 63799 |||||||||| | ||||||||| ||||| || Sbjct 33247 CGACACGCATGATCATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 145 bits (160), Expect = 1e-29 Identities = 398/598 (67%), Gaps = 24/598 (4%) Strand=Plus/Minus Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 |||||| | ||| |||||||| ||| ||||||||||| | | || | || || Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 ||| |||||||| ||||| || |||||||| || |||||||| ||||| ||||| || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----AC- 33744 | || || |||||||| || || |||||||| || | ||| | | | || | || Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 33745 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 || || ||| || ||||| | ||||| || || || | || | || || || Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 || || || |||| ||||| | | || | || || | || ||||| || Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATCTGAAATCCGTAGAAA 33920 | || || | || || || ||||||| | ||| ||||| || || ||||| Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602 Query 33921 CATCTAGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33979 |||| ||||| |||| | || ||||| | | || || || ||||||||||| || Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543 Query 33980 TATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 34038 || ||||||||||| ||||| || || | || || || || | |||||| | Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483 Query 34039 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 34095 || | || || || ||| || | | || || || | || | || || | |||| Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424 Query 34096 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 | || ||||| ||||||||||| ||||| | ||| || || ||||| | ||| ||||| Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817253600320