Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq43 165 1e-35
seq23 145 1e-29
>seq43
Length=605699
Score = 165 bits (182), Expect = 1e-35
Identities = 568/871 (65%), Gaps = 20/871 (2%)
Strand=Plus/Minus
Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998
||| |||| || || ||||| || || || ||||||| | ||| || | | ||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058
||| || || | || || |||||||| || || | || | || || ||| |||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118
|| || ||||| || || ||||| ||| | || || ||| | || | || | ||| ||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 63119 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT---CTT-TCGTAT 63173
| ||| | | || | ||||| || | | | || |||| | ||| |||||
Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843
Query 63174 AGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCC 63233
|| ||||| ||| || || || || | || | || || | ||||||||| |
Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| |||
Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723
Query 63294 CAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352
|| ||||| ||| || | || | || | || || || || ||||| |
Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664
Query 63353 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63411
|| ||||| |||| | || || | ||||| || || | ||| || || | | || |
Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605
Query 63412 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63471
| || ||||| || || || || | || || || ||||| || | || | || ||| |
Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545
Query 63472 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT-- 63529
| || || ||||| ||| ||||||| ||||||| || || | || | ||||| ||
Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485
Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589
| | ||||| |||| || || || || | |||||||| | || || |||||| |
Sbjct 33484 AGTGGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428
Query 63590 C-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63648
||||| |||||||| || || ||||| |||| | | || || || || |
Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368
Query 63649 TTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63708
||| | | || || || || || | |||||| || ||||| || || ||
Sbjct 33367 GTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGG 33308
Query 63709 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63768
||| | || ||||| |||||||| || || || || |||||| || || |
Sbjct 33307 AAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAG 33248
Query 63769 CGACACGCATTAACATGTGCTGAGGTCTTTC 63799
|||||||||| | ||||||||| ||||| ||
Sbjct 33247 CGACACGCATGATCATGTGCTGCGGTCTCTC 33217
>seq23
Length=690853
Score = 145 bits (160), Expect = 1e-29
Identities = 398/598 (67%), Gaps = 24/598 (4%)
Strand=Plus/Minus
Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630
|||||| | ||| |||||||| ||| ||||||||||| | | || | || ||
Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895
Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690
||| |||||||| ||||| || |||||||| || |||||||| ||||| ||||| || |
Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835
Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----AC- 33744
| || || |||||||| || || |||||||| || | ||| | | | || | ||
Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775
Query 33745 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803
|| || ||| || ||||| | ||||| || || || | || | || || ||
Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719
Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863
|| || || |||| ||||| | | || | || || | || ||||| ||
Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659
Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATCTGAAATCCGTAGAAA 33920
| || || | || || || ||||||| | ||| ||||| || || |||||
Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602
Query 33921 CATCTAGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33979
|||| ||||| |||| | || ||||| | | || || || ||||||||||| ||
Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543
Query 33980 TATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 34038
|| ||||||||||| ||||| || || | || || || || | |||||| |
Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483
Query 34039 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 34095
|| | || || || ||| || | | || || || | || | || || | ||||
Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424
Query 34096 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153
| || ||||| ||||||||||| ||||| | ||| || || ||||| | ||| |||||
Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817253600320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |