Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq43 172 7e-38
seq23 141 1e-28
>seq43
Length=605699
Score = 172 bits (190), Expect = 7e-38
Identities = 572/873 (66%), Gaps = 24/873 (3%)
Strand=Plus/Minus
Query 65732 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 65791
||| |||| || || ||||| || || || ||||||| | ||| || | | ||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851
||| || || | || || ||||||||||| || | || | || || ||| |||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911
|| || ||||| || || ||||| ||| | || || ||| | || | || | ||| ||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 65912 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT---CTT-TCGTAT 65966
| ||| | | || | ||||| || | | | || | || | ||| |||||
Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843
Query 65967 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 66026
|| ||||| ||| || || || || | || | || || ||||||||||| |
Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783
Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086
|| ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| |||
Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723
Query 66087 CAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145
|| ||||| ||| || || || | | | || || || || ||||| |
Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664
Query 66146 ATCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 66204
|| ||||| |||| | || || ||||| || || | ||| || || | | || |
Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605
Query 66205 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 66264
| || ||||| || || || || | || || || ||||| || | || | || ||| |
Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545
Query 66265 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT-- 66322
| || || || |||||||||||||| || |||| || || || || ||||||| ||
Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485
Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-A 66381
| | |||| ||||| || || || || | |||||||| | || || |||||| |
Sbjct 33484 AGTGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428
Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA--GCTAGA 66439
|| || |||||||| || || |||||| |||| | | || || || | |||
Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368
Query 66440 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 66499
| ||| | | || || || || || | |||||| || ||||| || || ||
Sbjct 33367 GTTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTT 33310
Query 66500 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 66559
||| | || ||||| |||||||| || || || || |||||| || ||
Sbjct 33309 GGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAAC 33250
Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592
||||||||||| | ||||||||| ||||| ||
Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTCTCTC 33217
>seq23
Length=690853
Score = 141 bits (156), Expect = 1e-28
Identities = 418/634 (66%), Gaps = 18/634 (3%)
Strand=Plus/Minus
Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206
|||||| | ||| |||||||| ||| ||||||||||| | | || | || |||
Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895
Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266
||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || |
Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835
Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326
|||| || || ||||| || || || ||||| || | ||| | | | || || ||
Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCA-AAGGTAGAC 88776
Query 36327 T-GTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382
| ||| | | ||||| | ||||| || || || | || | || || ||||||
Sbjct 88775 TCGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTC 88716
Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442
|| || |||| ||||| | | || | || || | ||||||||||| |
Sbjct 88715 TCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGG 88656
Query 36443 AGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATTTGAAATCCGTAGAAACAT 36499
|| || | || || || ||||||| | ||| || || || || ||||| |||
Sbjct 88655 AGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAGCAT 88599
Query 36500 CTAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558
| ||||| |||| | || ||||| | | || || || ||||||||||| || ||
Sbjct 88598 CGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAAT 88540
Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTG 36617
|| |||||||| ||||| || || | || || || || | ||||| | ||
Sbjct 88539 GCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGT- 88481
Query 36618 TTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674
| || || || ||| || | | || || || | || | || || | ||||| |
Sbjct 88480 TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGA 88421
Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 36734
| ||||| ||||||||||| ||||| | ||| || || ||||| | || || || | |
Sbjct 88420 AGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGA 88361
Query 36735 CAAATCTATTTTGATTTTTTGCAAGGATTGGTTC 36768
| || | || | |||| || |||| |||||
Sbjct 88360 CGAAGCGTTTCTTGTTTTCGGCGAGGAGGGGTTC 88327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172438004960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |