Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq43 172 7e-38 seq23 141 1e-28 >seq43 Length=605699 Score = 172 bits (190), Expect = 7e-38 Identities = 572/873 (66%), Gaps = 24/873 (3%) Strand=Plus/Minus Query 65732 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 65791 ||| |||| || || ||||| || || || ||||||| | ||| || | | || Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||| || || | || || ||||||||||| || | || | || || ||| ||| Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || || ||||| || || ||||| ||| | || || ||| | || | || | ||| || Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 65912 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT---CTT-TCGTAT 65966 | ||| | | || | ||||| || | | | || | || | ||| ||||| Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843 Query 65967 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 66026 || ||||| ||| || || || || | || | || || ||||||||||| | Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783 Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| ||| Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723 Query 66087 CAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145 || ||||| ||| || || || | | | || || || || ||||| | Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664 Query 66146 ATCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 66204 || ||||| |||| | || || ||||| || || | ||| || || | | || | Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605 Query 66205 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 66264 | || ||||| || || || || | || || || ||||| || | || | || ||| | Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545 Query 66265 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT-- 66322 | || || || |||||||||||||| || |||| || || || || ||||||| || Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-A 66381 | | |||| ||||| || || || || | |||||||| | || || |||||| | Sbjct 33484 AGTGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA--GCTAGA 66439 || || |||||||| || || |||||| |||| | | || || || | ||| Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368 Query 66440 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 66499 | ||| | | || || || || || | |||||| || ||||| || || || Sbjct 33367 GTTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTT 33310 Query 66500 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 66559 ||| | || ||||| |||||||| || || || || |||||| || || Sbjct 33309 GGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAAC 33250 Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 ||||||||||| | ||||||||| ||||| || Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 141 bits (156), Expect = 1e-28 Identities = 418/634 (66%), Gaps = 18/634 (3%) Strand=Plus/Minus Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 |||||| | ||| |||||||| ||| ||||||||||| | | || | || ||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266 ||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 |||| || || ||||| || || || ||||| || | ||| | | | || || || Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCA-AAGGTAGAC 88776 Query 36327 T-GTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 | ||| | | ||||| | ||||| || || || | || | || || |||||| Sbjct 88775 TCGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTC 88716 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || || |||| ||||| | | || | || || | ||||||||||| | Sbjct 88715 TCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGG 88656 Query 36443 AGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATTTGAAATCCGTAGAAACAT 36499 || || | || || || ||||||| | ||| || || || || ||||| ||| Sbjct 88655 AGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAGCAT 88599 Query 36500 CTAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558 | ||||| |||| | || ||||| | | || || || ||||||||||| || || Sbjct 88598 CGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAAT 88540 Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTG 36617 || |||||||| ||||| || || | || || || || | ||||| | || Sbjct 88539 GCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGT- 88481 Query 36618 TTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 | || || || ||| || | | || || || | || | || || | ||||| | Sbjct 88480 TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGA 88421 Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 36734 | ||||| ||||||||||| ||||| | ||| || || ||||| | || || || | | Sbjct 88420 AGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGA 88361 Query 36735 CAAATCTATTTTGATTTTTTGCAAGGATTGGTTC 36768 | || | || | |||| || |||| ||||| Sbjct 88360 CGAAGCGTTTCTTGTTTTCGGCGAGGAGGGGTTC 88327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172438004960