Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq43 172 8e-38 seq23 149 9e-31 >seq43 Length=605699 Score = 172 bits (190), Expect = 8e-38 Identities = 567/863 (66%), Gaps = 24/863 (3%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || ||||| || || || ||||||| | ||| || | | || || || || Sbjct 34067 GAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACAC 34008 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 | ||| || ||||| ||||| || | || | || || ||| ||| || || ||| Sbjct 34007 AAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCC 33948 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || || ||||| ||| | || || ||| | || | || | ||| || | ||| | | Sbjct 33947 TTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACA-G 33889 Query 79801 ACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT---CTT-TCGTATTGTGTATATA 79855 || | ||||| || | ||| || | || | ||| ||||| | || || | Sbjct 33888 CTTCTGTGCCTTGATGGT---CTTC-ATGACCTTGCCGGCCTTCTCGTACTTGGTGTACA 33833 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 | ||| || || || || | || |||| | ||||||||||||| || ||||| | Sbjct 33832 AGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGA 33773 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 ||||||||| |||| |||| || || ||||| ||||||||||| ||||| ||||| | Sbjct 33772 GCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGC-A 33714 Query 79976 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 || || | || | | | ||| || || || ||||| | || ||||| Sbjct 33713 TAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAA- 33655 Query 80035 GCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 |||| | || || | ||||| || || | ||| || || | | || || || ||||| Sbjct 33654 GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTT 33595 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || || || || | || || || ||||| || | || | || ||| || || || || Sbjct 33594 GCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCC 33535 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 80211 |||||||||||||| || |||| || || || || | ||||| || | | ||| Sbjct 33534 GTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATT 33475 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATA 80270 || |||| || || || || | |||||||| | || || |||||| | || || || Sbjct 33474 GA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGAGTGTGTCGTA 33418 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG--CTAGACATTTGGTGA 80328 |||||| || || ||||| |||| | | || || || | ||| | ||| Sbjct 33417 GATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTT 33358 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 | | || || || || || | |||||| || ||||| || || || ||||| Sbjct 33357 GGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATG 33300 Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGC 80448 || ||||| |||||||| || ||| || || |||||| || || ||||||||| Sbjct 33299 AGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGC 33240 Query 80449 ATTAACATGTGCTGAGGTCTTTC 80471 || | ||||||||| ||||| || Sbjct 33239 ATGATCATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 149 bits (164), Expect = 9e-31 Identities = 394/594 (66%), Gaps = 16/594 (3%) Strand=Plus/Minus Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 |||||| | ||| |||||||| ||| ||||||||||| | | || || || ||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 ||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--- 50125 |||| || |||||||| || || || ||||| || ||||| | | | || | | | Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 50126 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 || ||| ||||| | ||||| || || || | || | || || || || | Sbjct 88774 CGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCT 88715 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || |||| ||||| | | || | || || | || ||||| || | | Sbjct 88714 CGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGA 88655 Query 50246 GACTATACATTTCCGAATGAATGTTTT---CAATGGCCATCTGAAATCCGTAGAAACATC 50302 | || | || || || ||||||| | ||| ||||| || || ||||| |||| Sbjct 88654 GGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAGCATC 88598 Query 50303 TAGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTC-AGCTAAATTTTCATTCACTAT 50360 ||||| |||| | || ||||| | | || || || ||| ||||||||||| || || Sbjct 88597 GTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGC-AAATTTTCATTGACAAT 88540 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || |||||||| ||||| || || | || || || || ||||| | | Sbjct 88539 GCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTT 88480 Query 50421 TAGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 || || || ||| || | | || || || | || | || || | ||||| || Sbjct 88479 GAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAA 88420 Query 50478 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||||| ||||||||||| ||||| | ||| || || ||||| | ||| ||||| Sbjct 88419 GGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268404952160