Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq43 172 8e-38
seq23 149 9e-31
>seq43
Length=605699
Score = 172 bits (190), Expect = 8e-38
Identities = 567/863 (66%), Gaps = 24/863 (3%)
Strand=Plus/Minus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680
|| || ||||| || || || ||||||| | ||| || | | || || || ||
Sbjct 34067 GAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACAC 34008
Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740
| ||| || ||||| ||||| || | || | || || ||| ||| || || |||
Sbjct 34007 AAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCC 33948
Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800
|| || || ||||| ||| | || || ||| | || | || | ||| || | ||| | |
Sbjct 33947 TTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACA-G 33889
Query 79801 ACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT---CTT-TCGTATTGTGTATATA 79855
|| | ||||| || | ||| || | || | ||| ||||| | || || |
Sbjct 33888 CTTCTGTGCCTTGATGGT---CTTC-ATGACCTTGCCGGCCTTCTCGTACTTGGTGTACA 33833
Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915
| ||| || || || || | || |||| | ||||||||||||| || ||||| |
Sbjct 33832 AGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGA 33773
Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975
||||||||| |||| |||| || || ||||| ||||||||||| ||||| ||||| |
Sbjct 33772 GCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGC-A 33714
Query 79976 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034
|| || | || | | | ||| || || || ||||| | || |||||
Sbjct 33713 TAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAA- 33655
Query 80035 GCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093
|||| | || || | ||||| || || | ||| || || | | || || || |||||
Sbjct 33654 GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTT 33595
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|| || || || | || || || ||||| || | || | || ||| || || || ||
Sbjct 33594 GCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCC 33535
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 80211
|||||||||||||| || |||| || || || || | ||||| || | | |||
Sbjct 33534 GTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATT 33475
Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATA 80270
|| |||| || || || || | |||||||| | || || |||||| | || || ||
Sbjct 33474 GA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGAGTGTGTCGTA 33418
Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG--CTAGACATTTGGTGA 80328
|||||| || || ||||| |||| | | || || || | ||| | |||
Sbjct 33417 GATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTT 33358
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
| | || || || || || | |||||| || ||||| || || || |||||
Sbjct 33357 GGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATG 33300
Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGC 80448
|| ||||| |||||||| || ||| || || |||||| || || |||||||||
Sbjct 33299 AGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGC 33240
Query 80449 ATTAACATGTGCTGAGGTCTTTC 80471
|| | ||||||||| ||||| ||
Sbjct 33239 ATGATCATGTGCTGCGGTCTCTC 33217
>seq23
Length=690853
Score = 149 bits (164), Expect = 9e-31
Identities = 394/594 (66%), Gaps = 16/594 (3%)
Strand=Plus/Minus
Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008
|||||| | ||| |||||||| ||| ||||||||||| | | || || || |||
Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895
Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068
||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || |
Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835
Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--- 50125
|||| || |||||||| || || || ||||| || ||||| | | | || | | |
Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775
Query 50126 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185
|| ||| ||||| | ||||| || || || | || | || || || || |
Sbjct 88774 CGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCT 88715
Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245
| || |||| ||||| | | || | || || | || ||||| || | |
Sbjct 88714 CGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGA 88655
Query 50246 GACTATACATTTCCGAATGAATGTTTT---CAATGGCCATCTGAAATCCGTAGAAACATC 50302
| || | || || || ||||||| | ||| ||||| || || ||||| ||||
Sbjct 88654 GGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAGCATC 88598
Query 50303 TAGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTC-AGCTAAATTTTCATTCACTAT 50360
||||| |||| | || ||||| | | || || || ||| ||||||||||| || ||
Sbjct 88597 GTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGC-AAATTTTCATTGACAAT 88540
Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420
|| |||||||| ||||| || || | || || || || ||||| | |
Sbjct 88539 GCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTT 88480
Query 50421 TAGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477
|| || || ||| || | | || || || | || | || || | ||||| ||
Sbjct 88479 GAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAA 88420
Query 50478 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531
||||| ||||||||||| ||||| | ||| || || ||||| | ||| |||||
Sbjct 88419 GGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268404952160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |