Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq23 100 3e-16
>seq23
Length=690853
Score = 100 bits (110), Expect = 3e-16
Identities = 365/569 (64%), Gaps = 7/569 (1%)
Strand=Plus/Minus
Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718
||| || ||||| || || ||||| || | | || || || || ||| || |
Sbjct 88944 ACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAG 88885
Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778
||| ||||| | || || || || | |||||| || | ||||| || || || || ||
Sbjct 88884 TCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAA 88825
Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838
|||||||| || |||||||| || | || || | |||| | | | | || ||
Sbjct 88824 GATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGC 88765
Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898
||||| ||||| || | ||||| || || | ||||| ||||||||||
Sbjct 88764 AATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATC 88705
Query 13899 GAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
||| | || | | || || | ||||| ||||||||||||| || | | ||
Sbjct 88704 GAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGA--TGTATGTATCAATGAGGAGGGAGTAG 88647
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
| || ||||| |||||||| ||||| || ||||| || |||| || ||||
Sbjct 88646 GTCTCTGAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGT 88587
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
||| || || | | || | || ||| |||||||| ||||| |||||||| ||
Sbjct 88586 ACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCG 88527
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT---C 14133
||||| || || | | || || ||| | | || || | |||||| || || |
Sbjct 88526 GCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCC 88467
Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193
|| ||| | ||||| || || || | || || | ||||| || || | ||
Sbjct 88466 CAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCC 88407
Query 14194 TTTTTATACATTACCCATATTTCTTTATA 14222
||||| |||||| ||| || || | |||
Sbjct 88406 TTTTTGTACATTTGCCAAATCTCGTGATA 88378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588536776160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |