Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq23 100 3e-16 >seq23 Length=690853 Score = 100 bits (110), Expect = 3e-16 Identities = 365/569 (64%), Gaps = 7/569 (1%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| || ||||| || || ||||| || | | || || || || ||| || | Sbjct 88944 ACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAG 88885 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 ||| ||||| | || || || || | |||||| || | ||||| || || || || || Sbjct 88884 TCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAA 88825 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 |||||||| || |||||||| || | || || | |||| | | | | || || Sbjct 88824 GATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGC 88765 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| ||||| || | ||||| || || | ||||| |||||||||| Sbjct 88764 AATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATC 88705 Query 13899 GAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | || | | || || | ||||| ||||||||||||| || | | || Sbjct 88704 GAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGA--TGTATGTATCAATGAGGAGGGAGTAG 88647 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 | || ||||| |||||||| ||||| || ||||| || |||| || |||| Sbjct 88646 GTCTCTGAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGT 88587 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| || || | | || | || ||| |||||||| ||||| |||||||| || Sbjct 88586 ACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCG 88527 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT---C 14133 ||||| || || | | || || ||| | | || || | |||||| || || | Sbjct 88526 GCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCC 88467 Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 || ||| | ||||| || || || | || || | ||||| || || | || Sbjct 88466 CAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCC 88407 Query 14194 TTTTTATACATTACCCATATTTCTTTATA 14222 ||||| |||||| ||| || || | ||| Sbjct 88406 TTTTTGTACATTTGCCAAATCTCGTGATA 88378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588536776160