Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq43 161 1e-34
>seq43
Length=605699
Score = 161 bits (178), Expect = 1e-34
Identities = 568/870 (65%), Gaps = 18/870 (2%)
Strand=Plus/Minus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|||||||| || || ||||| || || || ||||||| | | | || | | |||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
|| || || | || || ||||||||||| || | || | || || ||| |||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| || ||||| || || || || ||| | || || ||| | || | || | ||| ||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT-TCGTATTGT 71931
| ||| | | || | ||||| || | ||| || | || ||| ||||| |
Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGATGGTCTTCATG-ACCTTGCCGGCCTTCTCGTACTTG 33840
Query 71932 GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGA 71991
|| || || ||| || || || || | | | || | ||||||||||| || ||
Sbjct 33839 GTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGG 33780
Query 71992 CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAA 72051
||||| | |||||||| |||| || | || || ||||| ||||||||||| |||||
Sbjct 33779 CACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAG 33720
Query 72052 AGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110
||||| ||| || | || | | | ||| || || || ||||| | ||
Sbjct 33719 AGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTC 33661
Query 72111 GAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169
||||| |||| | || || | ||||| || || | ||| || || | | || || |
Sbjct 33660 AAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGAC 33602
Query 72170 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 72229
| ||||| || || || || | || || || ||||| || | || | || ||| || |
Sbjct 33601 GCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGA 33542
Query 72230 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATT 72287
| || || ||||||| |||||| || |||| || || || || | ||||| || | |
Sbjct 33541 TGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGT 33482
Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-G 72346
| ||||| |||| || || || || | |||||||| | || || |||||| | |
Sbjct 33481 GGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGAGTG 33425
Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG--CTAGACAT 72404
| || |||||||| || || |||||| |||| | | || || || | ||| |
Sbjct 33424 TGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTT 33365
Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464
||| | | || || || || || | |||||| || ||||| || || ||
Sbjct 33364 GTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGA 33307
Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGC 72524
||||| || ||||| |||||||| || ||| || || ||| || || || ||
Sbjct 33306 AGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGC 33247
Query 72525 GACACGCATTAACATATGCTGAGGTCTTTC 72554
||||||||| | ||| ||||| ||||| ||
Sbjct 33246 GACACGCATGATCATGTGCTGCGGTCTCTC 33217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138830873440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |