Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq23 233 3e-56
seq43 132 7e-26
>seq23
Length=690853
Score = 233 bits (258), Expect = 3e-56
Identities = 595/896 (66%), Gaps = 41/896 (5%)
Strand=Plus/Plus
Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053
||| || ||||||| |||||| || |||||| |||||||||||||||| | || |||||
Sbjct 88362 CCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTT 88421
Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGA 125112
||||| | ||| ||| | || || |||||||||||| |||| ||||||| | | | |
Sbjct 88422 CTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAACAAGCTCAA 88481
Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172
| || || || || || || ||| | | || |||||||||| | ||||| |
Sbjct 88482 CGACGAC-GAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCA 88540
Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTC 125230
| ||||| || ||| || | || ||||| | || | ||| | |||||||
Sbjct 88541 TTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGT--CCAAGTACCAGAGGCACG 88598
Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290
||||| || || ||||| |||||| || ||| | ||||| || | ||||| ||
Sbjct 88599 ATGCTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCT 88658
Query 125291 GATTGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347
||||| | ||||| || | | ||||| | ||| ||||| | ||||||||
Sbjct 88659 CATTGATACATACATCAAGGAACAAGCTCAACGGCAGCAC---CTCTTCGATGCAATCGA 88715
Query 125348 CACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406
|| | |||| || | | |||||| | | |||| | || ||||| | ||||||
Sbjct 88716 GACAATCCCGTGCATCAAGCAAAAAG-CAGACTGGGCACTGCGCTGGATTGCAGACGACG 88774
Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466
||||| | | || | || ||||| || || || || ||||| ||||| || || |
Sbjct 88775 AGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTG 88834
Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526
| || || |||||||||||||||||||||| || |||||||| ||||| || |
Sbjct 88835 GCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTA 88894
Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586
| || ||| | || ||||| |||||||| || ||| || || ||| ||| |||||
Sbjct 88895 GCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTTTA 88954
Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAA-----AGGTCATCAACATTGT 125641
| ||| || ||| | ||| | ||| |||| |||| |
Sbjct 88955 GTCACT--------------TGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCAT 89000
Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701
|| || || || ||| || || | || || || || |||||||| | | | |
Sbjct 89001 TACTGAAGCTGTTGAGATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCCCCTTATT 89060
Query 125702 TGGCATGAACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760
|| || || ||| ||||| ||| |||||||||| || ||||| || ||||| || ||
Sbjct 89061 GGGTATCAA-TGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCT-- 89117
Query 125761 ACGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817
|| | ||||| | ||| | || || ||| ||||| ||||| || ||| |
Sbjct 89118 -CGTCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGA 89176
Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873
||| ||||| | || ||||||||||| || |||||| ||| | || ||| ||
Sbjct 89177 ACATTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAA 89232
>seq43
Length=605699
Score = 132 bits (146), Expect = 7e-26
Identities = 323/484 (67%), Gaps = 4/484 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
|| || ||||| || || ||||| || | || | ||| | || || |||||||| |||
Sbjct 33586 CAAGGTGGCAACAAGCGTCCAGGTGCCTTTGCTATTTACATTGAGCCATGGCACGCAGAC 33645
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
| |||| ||| | || ||||||| ||| ||| ||||||| || || | |||
Sbjct 33646 ATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCACGCGAC 33705
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
||||| ||||| |||||| | || ||| | ||||||||||| || | || |||| |
Sbjct 33706 TTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGGAGAATGGCGAG 33765
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
||| || ||||||||| || | || ||| || ||| | ||||| || |||
Sbjct 33766 TGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGTATGGCGATGAATTT 33825
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATGCACG 97174
|| ||| |||||| |||||| | | ||| | || |||| | || | ||||
Sbjct 33826 GAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAGACCA-TCAAGGCAC- 33883
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | || || | ||| || ||||| || | ||| | ||| || |
Sbjct 33884 AGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAATCCCTTCATGCTGT 33943
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
||||||| || || ||||| ||||| || | || ||||||||| || ||
Sbjct 33944 ACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACCATCAAGTGCAGCA 34003
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| |||| || || ||||| |||||| | | || || ||| ||| || ||| ||| |
Sbjct 34004 ACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGCTGTCTGCAATCTCG 34063
Query 97354 CATC 97357
| ||
Sbjct 34064 CCTC 34067
Score = 107 bits (118), Expect = 3e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 98038 TCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096
||||||||||||| |||||| | || | ||| | |||||||||||||||| ||| |
Sbjct 34769 TCTACAAGACTGTATGGGAGCTCTCTCAAAAAGTGG-TGATCGATATGGCTGCTGACCGT 34827
Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156
|||| || ||||| ||| ||||| |||| || | | | ||| || | | ||
Sbjct 34828 GGTGCCTTTATTGATCAGTCGCAATCCCTCAACTTGCATCTCAAGGCGCCGACATTCGGT 34887
Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216
|| || ||||| |||||||| | ||||| ||||| ||||||||||||||||||||
Sbjct 34888 AAAATTACATCGATGCACTTTTATGGTTGGAAGAAGGGACTCAAGACGGGCATGTACTAC 34947
Query 98217 CTG 98219
|||
Sbjct 34948 CTG 34950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058792417440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |