Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 233 3e-56 seq43 132 7e-26 >seq23 Length=690853 Score = 233 bits (258), Expect = 3e-56 Identities = 595/896 (66%), Gaps = 41/896 (5%) Strand=Plus/Plus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || ||||||| |||||| || |||||| |||||||||||||||| | || ||||| Sbjct 88362 CCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTT 88421 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGA 125112 ||||| | ||| ||| | || || |||||||||||| |||| ||||||| | | | | Sbjct 88422 CTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAACAAGCTCAA 88481 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || || || || || || ||| | | || |||||||||| | ||||| | Sbjct 88482 CGACGAC-GAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCA 88540 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTC 125230 | ||||| || ||| || | || ||||| | || | ||| | ||||||| Sbjct 88541 TTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGT--CCAAGTACCAGAGGCACG 88598 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| || || ||||| |||||| || ||| | ||||| || | ||||| || Sbjct 88599 ATGCTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCT 88658 Query 125291 GATTGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347 ||||| | ||||| || | | ||||| | ||| ||||| | |||||||| Sbjct 88659 CATTGATACATACATCAAGGAACAAGCTCAACGGCAGCAC---CTCTTCGATGCAATCGA 88715 Query 125348 CACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 || | |||| || | | |||||| | | |||| | || ||||| | |||||| Sbjct 88716 GACAATCCCGTGCATCAAGCAAAAAG-CAGACTGGGCACTGCGCTGGATTGCAGACGACG 88774 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||||| | | || | || ||||| || || || || ||||| ||||| || || | Sbjct 88775 AGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTG 88834 Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || || |||||||||||||||||||||| || |||||||| ||||| || | Sbjct 88835 GCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTA 88894 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 | || ||| | || ||||| |||||||| || ||| || || ||| ||| ||||| Sbjct 88895 GCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTTTA 88954 Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAA-----AGGTCATCAACATTGT 125641 | ||| || ||| | ||| | ||| |||| |||| | Sbjct 88955 GTCACT--------------TGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCAT 89000 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 || || || || ||| || || | || || || || |||||||| | | | | Sbjct 89001 TACTGAAGCTGTTGAGATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCCCCTTATT 89060 Query 125702 TGGCATGAACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 || || || ||| ||||| ||| |||||||||| || ||||| || ||||| || || Sbjct 89061 GGGTATCAA-TGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCT-- 89117 Query 125761 ACGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 || | ||||| | ||| | || || ||| ||||| ||||| || ||| | Sbjct 89118 -CGTCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGA 89176 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 ||| ||||| | || ||||||||||| || |||||| ||| | || ||| || Sbjct 89177 ACATTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAA 89232 >seq43 Length=605699 Score = 132 bits (146), Expect = 7e-26 Identities = 323/484 (67%), Gaps = 4/484 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || ||||| || | || | ||| | || || |||||||| ||| Sbjct 33586 CAAGGTGGCAACAAGCGTCCAGGTGCCTTTGCTATTTACATTGAGCCATGGCACGCAGAC 33645 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | |||| ||| | || ||||||| ||| ||| ||||||| || || | ||| Sbjct 33646 ATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCACGCGAC 33705 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||||| |||||| | || ||| | ||||||||||| || | || |||| | Sbjct 33706 TTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGGAGAATGGCGAG 33765 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||||||| || | || ||| || ||| | ||||| || ||| Sbjct 33766 TGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGTATGGCGATGAATTT 33825 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATGCACG 97174 || ||| |||||| |||||| | | ||| | || |||| | || | |||| Sbjct 33826 GAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAGACCA-TCAAGGCAC- 33883 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | || || | ||| || ||||| || | ||| | ||| || | Sbjct 33884 AGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAATCCCTTCATGCTGT 33943 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| || || ||||| ||||| || | || ||||||||| || || Sbjct 33944 ACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACCATCAAGTGCAGCA 34003 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | |||| || || ||||| |||||| | | || || ||| ||| || ||| ||| | Sbjct 34004 ACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGCTGTCTGCAATCTCG 34063 Query 97354 CATC 97357 | || Sbjct 34064 CCTC 34067 Score = 107 bits (118), Expect = 3e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||||| |||||| | || | ||| | |||||||||||||||| ||| | Sbjct 34769 TCTACAAGACTGTATGGGAGCTCTCTCAAAAAGTGG-TGATCGATATGGCTGCTGACCGT 34827 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || ||||| ||| ||||| |||| || | | | ||| || | | || Sbjct 34828 GGTGCCTTTATTGATCAGTCGCAATCCCTCAACTTGCATCTCAAGGCGCCGACATTCGGT 34887 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 || || ||||| |||||||| | ||||| ||||| |||||||||||||||||||| Sbjct 34888 AAAATTACATCGATGCACTTTTATGGTTGGAAGAAGGGACTCAAGACGGGCATGTACTAC 34947 Query 98217 CTG 98219 ||| Sbjct 34948 CTG 34950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058792417440