Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq43 134 3e-26 >seq43 Length=605699 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| | | ||| | ||| || || || || || ||| Sbjct 451138 GTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCA 451197 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 |||||||| || | ||| |||||||| || || || || || ||||||||| ||||| || Sbjct 451198 GCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATC-TTGCTCTT 451256 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | || ||||| ||||| || ||||| |||||||| || Sbjct 451257 GACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGT 451316 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 451317 CTTGACAAAGATCTGCAT 451334 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || || |||||||| || ||||| | | ||| | ||| || || || || Sbjct 450448 TGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGC 450507 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | ||| || ||||| || || ||||| || || |||||| || Sbjct 450508 TTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGAATC-TT 450566 Query 104477 GCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||| || || || || | ||| || | |||||||| ||||| || ||||| ||||| Sbjct 450567 GCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTCTTTCCAGT 450626 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| Sbjct 450627 CAGAGTCTTGACGAAAATTTGCAT 450650 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||| ||||| || || || ||| Sbjct 451366 GTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCAAGCTGCTTACCA 451425 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| || || || || || ||||| || |||||||| || | || Sbjct 451426 GCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATTTTCGACTTG 451485 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | ||| ||||| || ||||| ||||| ||||||||||| Sbjct 451486 ACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTC 451545 Query 104543 TTTACAAATATCT 104555 || ||||| |||| Sbjct 451546 TTGACAAAGATCT 451558 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | | ||| | |||||| || || || || ||| Sbjct 450910 GTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCA 450969 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 |||||||| || | ||| || ||||| || || ||||| || || || ||| ||||| || Sbjct 450970 GCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATC-TTGCTCTT 451028 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | |||||||| |||||||| ||||| ||||| | || Sbjct 451029 GACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGT 451088 Query 104542 TTTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 451089 CTTGACGAAAATTTGCAT 451106 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| | || || | ||||| || || || || ||| Sbjct 450682 GTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 450741 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 |||||||| || | ||| || ||||| || || || || || || |||||| ||||| || Sbjct 450742 GCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGAATC-TTGCTCTT 450800 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | ||| || || |||||||| ||||| ||||| | || Sbjct 450801 GACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGT 450860 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 450861 CTTAACGAAAATCTGCAT 450878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397750899152