Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq43 95.1 1e-14 >seq43 Length=605699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||| ||||| || ||||| || | ||||| |||||||| || | | Sbjct 451143 CTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAA 451202 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||||||| || | | ||||||||| ||| || ||||| | Sbjct 451203 AATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATT 451262 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||||| ||||| ||| ||||| || || || ||||| || || Sbjct 451263 GTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGAC 451322 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 451323 AAAGATCTGCAT 451334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || ||| || | || || ||||||||||| || Sbjct 451371 CTCCTTCTGGATGTTGTAGTCTGC-AAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGA 451429 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| ||||||||||| ||| || | | |||||||||| ||||||| ||||| | Sbjct 451430 AAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATTTTCGACTTGACAT 451489 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | || || ||| | || ||||| || || || || || || | Sbjct 451490 TGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGA 451549 Query 48714 CAAAAATCT 48722 |||| |||| Sbjct 451550 CAAAGATCT 451558 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || || | ||| |||||| ||||||||||| || ||||| || | ||| Sbjct 450439 AACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATCC 450498 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || | | || | ||||||||| || || | || ||||||||| Sbjct 450499 TCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCT 450558 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | ||||| || | ||||| ||||| ||| ||||| Sbjct 450559 TGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTC 450618 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| || || ||||| ||||| Sbjct 450619 TTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250974104044