Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=440545 Score = 107 bits (118), Expect = 2e-18 Identities = 220/325 (68%), Gaps = 14/325 (4%) Strand=Plus/Minus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 ||||| ||||||||||||||| | | ||||| | ||| ||| | ||||| | ||| | Sbjct 174822 AAAATCGTTAATGGTCCTGAAATCCTCAACAAGTTTGTGGGTCAATCAGAGGAGAATATC 174763 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTA-GCTAGTAAATT 164723 || ||| | ||| || || ||| | || | ||| | | ||| | | | ||| || Sbjct 174762 AGGAAGCTCTTTGCAGATGCGGAAAAGGAGTACAAGGA-GAAGGGTGACGAGAGTTCGTT 174704 Query 164724 ACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATATTAT 164783 ||| | ||| | ||||||||| | ||||| |||||||| | ||||| || | Sbjct 174703 ACACATCATTATCTTTGATGAGCTCGATGCAATTTGCAAACAGCGTGGATCTACAGGTGG 174644 Query 164784 T--CA----------TGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGA 164831 | || ||| | ||||| |||||| |||| || ||||| |||||||| || Sbjct 174643 TGGCACGGGTGTCGGTGACTCGGTGGTCAATCAGCTGCTCTCCAAAATGGATGGTGTCGA 174584 Query 164832 ATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGC 164891 | || ||||| | ||| | |||||||||||||||| || | ||||| || || Sbjct 174583 CCAACTCAACAATATCCTCATTATTGGTATGACCAACCGACTAGACATGATTGACGAAGC 174524 Query 164892 TTTATTACGACCTGGTCGATTAGAA 164916 | ||||||| |||||||| ||| Sbjct 174523 CCTGCTACGACCAGGTCGATTGGAA 174499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871672270400