Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq43 127 2e-24 >seq43 Length=605699 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| |||||| | | ||||||||||||||||| || || ||||| || | ||| | Sbjct 450416 TTTACTGTCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGT 450475 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || |||| |||||| ||||| ||||| ||||||| | | ||||| | Sbjct 450476 AGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGT 450535 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||||||||| ||||| | ||| || ||||||| | | | ||||| | Sbjct 450536 CAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATG 450595 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| |||||||| ||||| || || || || ||||| Sbjct 450596 ACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | || || ||| || |||| |||||| ||||| || || Sbjct 451138 GTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCA 451197 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || | | |||||||| || ||||| || || ||||| | ||| || |||| Sbjct 451198 GCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 451257 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | | ||||| | || || || | |||||||| |||||||||||||| Sbjct 451258 ACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTC 451317 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 451318 TTGACAAAGATCTGCAT 451334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290953439840