Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41 179 6e-41 seq3 179 6e-41 >seq41 Length=616673 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| || || |||||||| || ||||||||||| || ||| Sbjct 347134 GCAAAGCGTCACCGCAAAATTCTGCGTGACAACATCCAGGGTATCACCAAGCCTGCAATC 347193 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || ||||||||| |||| || | |||| || |||| Sbjct 347194 CGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGACA 347253 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||| ||||||| || || || | |||||| || ||| || ||| Sbjct 347254 CGCGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATTCGTGATGCAGTCACCTACACTGAG 347313 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||||| | ||| | |||||||| ||||| | || ||| Sbjct 347314 CACGCCAAGCGCAAGACCGTCACCTCGCTCGATGTTGTCTATGCCTTGAAGAGGCAGGGC 347373 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | || || || || || ||||| Sbjct 347374 CGCACCATCTACGGATTCGGTGGTTAA 347400 >seq3 Length=560494 Score = 179 bits (198), Expect = 6e-41 Identities = 198/261 (76%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| |||| || || || |||||||| || ||||||||||| ||||| Sbjct 501003 GCCAAGCGTCACCGCAAGATC-CTGCGTGACAACATCCAGGGCATCACCAAGCCTGCTAT 501061 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 501062 TCGTCGTCTTGCCCGTCGTGGCGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGAC 501121 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | |||| |||||| || ||| || | ||||| | ||| || || Sbjct 501122 ACGCGGTGTTCTCAAGACTTTCCTCGAGGGCGTCATTCGGGATGCAGTTACCTACACAGA 501181 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||||| | ||| | || || ||| | ||||||||||| Sbjct 501182 GCACGCCAAGCGCAAGACTGTCACCTCGCTCGATGTGGTGTACGCACTCAAACGTCAAGG 501241 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 | | | || || ||||| || Sbjct 501242 CAGGACCATCTACGGTTTCGG 501262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075159770492