Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq43 167 3e-36
seq23 156 5e-33
>seq43
Length=605699
Score = 167 bits (184), Expect = 3e-36
Identities = 571/873 (65%), Gaps = 24/873 (3%)
Strand=Plus/Minus
Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947
|||||||| || || ||||| || || || ||||||| | ||| || | | ||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007
||| || || | || || |||||||| || || | || | || || ||| |||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067
|| || ||||| || || ||||| ||| | || || ||| | || | || | ||| ||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT---CTT-TCGTAT 63122
| ||| | | || | ||||| || | | | || |||| | ||| |||||
Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843
Query 63123 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 63182
|| ||||| ||| || || || || | || | || || ||||||||||| |
Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783
Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242
|| ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| |||
Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723
Query 63243 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301
|| ||||| ||| || | || | | | || || || || ||||| |
Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664
Query 63302 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360
|| ||||| |||| | || || | ||||| || || | ||| || || | | || |
Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605
Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420
| || ||||| || || || || | || || || ||||| || | || | || ||| |
Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545
Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT-- 63478
| || || ||||| ||| ||||||| ||||||| || || || || | ||||| ||
Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485
Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538
| | ||||| |||| || || || || | |||||||| | || || |||||| |
Sbjct 33484 AGTGGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428
Query 63539 C-GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG--CTAGA 63595
||||| ||||| || || || ||||| |||| | | || || || | |||
Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368
Query 63596 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655
| ||| | | || || || || || | |||||| || ||||| || || ||
Sbjct 33367 GTTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTT 33310
Query 63656 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63715
||| | || ||||| |||||||| || || || || |||||| || ||
Sbjct 33309 GGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAAC 33250
Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
||||||||||| | ||||||||| ||||| ||
Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTCTCTC 33217
>seq23
Length=690853
Score = 156 bits (172), Expect = 5e-33
Identities = 426/638 (67%), Gaps = 26/638 (4%)
Strand=Plus/Minus
Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352
|||||| | ||| |||||||| ||| ||||||||||| | | || || || |||
Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895
Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412
||| |||||||| ||||| || |||||||| || |||||||| ||||| ||||| || |
Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835
Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----AC- 33466
|||| || |||||||| || || |||||||| || | ||| | | | || | ||
Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775
Query 33467 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525
|| || ||| || ||||| | ||||| || || || | || | || || ||
Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719
Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585
|| || || |||| ||||| | | || | || || | || ||||| ||
Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659
Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATCTGAAATCCGTAGAAA 33642
| || || | || || || ||||||| | ||| ||||| || || |||||
Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602
Query 33643 CATCTAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCAC 33701
|||| ||||| |||| | || ||||| | | || || || |||||||||||| ||
Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543
Query 33702 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 33760
|| || |||||||| ||||| || || | || || || || | |||||| |
Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483
Query 33761 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCC 33817
|| | || || || ||| || | | || || || | || | || || | ||||
Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424
Query 33818 AAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAA 33877
| || ||||| ||||||||||| ||||| | ||| || || | ||| | ||| ||||| |
Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGA 88364
Query 33878 TAACAAATC-TATTTGGATTTGGTGCAAGGATGGGTTC 33914
|| || | | | | | ||| | || |||| ||||||
Sbjct 88363 GGACGAAGCGTTTCTTGTTTTCG-GCGAGGAGGGGTTC 88327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946857379040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |