Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq43 167 3e-36 seq23 156 5e-33 >seq43 Length=605699 Score = 167 bits (184), Expect = 3e-36 Identities = 571/873 (65%), Gaps = 24/873 (3%) Strand=Plus/Minus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 |||||||| || || ||||| || || || ||||||| | ||| || | | || Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||| || || | || || |||||||| || || | || | || || ||| ||| Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || || ||||| || || ||||| ||| | || || ||| | || | || | ||| || Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT---CTT-TCGTAT 63122 | ||| | | || | ||||| || | | | || |||| | ||| ||||| Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843 Query 63123 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 63182 || ||||| ||| || || || || | || | || || ||||||||||| | Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783 Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| ||| Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723 Query 63243 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 || ||||| ||| || | || | | | || || || || ||||| | Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664 Query 63302 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 || ||||| |||| | || || | ||||| || || | ||| || || | | || | Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | || ||||| || || || || | || || || ||||| || | || | || ||| | Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545 Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT-- 63478 | || || ||||| ||| ||||||| ||||||| || || || || | ||||| || Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 | | ||||| |||| || || || || | |||||||| | || || |||||| | Sbjct 33484 AGTGGACATTGA--GACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428 Query 63539 C-GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG--CTAGA 63595 ||||| ||||| || || || ||||| |||| | | || || || | ||| Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368 Query 63596 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655 | ||| | | || || || || || | |||||| || ||||| || || || Sbjct 33367 GTTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTT 33310 Query 63656 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63715 ||| | || ||||| |||||||| || || || || |||||| || || Sbjct 33309 GGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAAC 33250 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 ||||||||||| | ||||||||| ||||| || Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 156 bits (172), Expect = 5e-33 Identities = 426/638 (67%), Gaps = 26/638 (4%) Strand=Plus/Minus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 |||||| | ||| |||||||| ||| ||||||||||| | | || || || ||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 ||| |||||||| ||||| || |||||||| || |||||||| ||||| ||||| || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----AC- 33466 |||| || |||||||| || || |||||||| || | ||| | | | || | || Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 33467 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 || || ||| || ||||| | ||||| || || || | || | || || || Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719 Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 || || || |||| ||||| | | || | || || | || ||||| || Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATCTGAAATCCGTAGAAA 33642 | || || | || || || ||||||| | ||| ||||| || || ||||| Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602 Query 33643 CATCTAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCAC 33701 |||| ||||| |||| | || ||||| | | || || || |||||||||||| || Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543 Query 33702 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 33760 || || |||||||| ||||| || || | || || || || | |||||| | Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483 Query 33761 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCC 33817 || | || || || ||| || | | || || || | || | || || | |||| Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424 Query 33818 AAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAA 33877 | || ||||| ||||||||||| ||||| | ||| || || | ||| | ||| ||||| | Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGA 88364 Query 33878 TAACAAATC-TATTTGGATTTGGTGCAAGGATGGGTTC 33914 || || | | | | | ||| | || |||| |||||| Sbjct 88363 GGACGAAGCGTTTCTTGTTTTCG-GCGAGGAGGGGTTC 88327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946857379040