Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq43 426 4e-114 >seq43 Length=605699 Score = 426 bits (472), Expect = 4e-114 Identities = 1162/1756 (66%), Gaps = 40/1756 (2%) Strand=Plus/Plus Query 363427 CGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGT 363486 |||||| |||||| | ||| || | |||||||| ||| | |||||||| ||| |||| Sbjct 33196 CGTATCGATGGTGCTGTTGCAGAGAGACCGCAGCACATGATCATGCGTGTCGCTGTTGGC 33255 Query 363487 ATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA 363546 || ||| | || |||| || ||||| ||||| || || | | | | | | Sbjct 33256 ATTCATGGTGATGACATTGAAAAGGCCATTGAGACATACAACCTCATGTCTTC-CAAGCA 33314 Query 363547 -TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTC 363605 ||||| ||||| |||| || | | ||| || || || | || ||||| | || || Sbjct 33315 CTTCACACACGCATCGCCTACCCTCTTCAACGCCGGTACGCCCAACCCACAACTCTCGTC 33374 Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | | ||||||||| || || ||||| || |||| |||||||| || | Sbjct 33375 TTGCTTCCTTGTCACAATGAAGGATGACTCGATCGATGGCATCTACGACACACTCAAAAC 33434 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 ||||| | || || |||| || || || |||||| | ||||| | ||||| Sbjct 33435 GTGTGCCATGATCTCTAAGACAGCCGGTGGCATTGGTCTCAATGTCCACTGCATCCGTGC 33494 Query 363726 A-CAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 | ||| |||||||||| ||| ||| || ||| || || || | | |||||||| Sbjct 33495 AACAGG-CAGTTACATTGCCGGTACAAATGG-TACATCCAACGGCATCATCCCCATGCTG 33552 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| ||||| ||||| |||||||| ||||| ||||| ||| || Sbjct 33553 CGTGTCTTCAACAACACTGCCAGGTATGTCGACCAAGGTGGCAACAAGCGTCCAGGTGCC 33612 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 |||||||| || | ||||| || || || || |||| || ||||| | || || Sbjct 33613 TTTGCTATTTACATTGAGCCATGGCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAG 33672 Query 363904 AAC-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||| |||| || |||||| | || ||||| || |||||||||| || ||| | || Sbjct 33673 AACCACGGCAAGGAAGAGG---TCCGCGCACGCGACTTGTTCTATGCTCTCTGGATCCCT 33729 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAA 364020 || | || |||||||| ||||||| | | ||||| ||| | ||||| ||||| Sbjct 33730 GATCTCTTCATGAAGCGTGTGGAGGAGAATGGCGAGTGGTCGCTCATGTGCCCCAACGAA 33789 Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 ||||| ||| | ||| || | || || || | || || | ||| ||||| || Sbjct 33790 TGTCCTGGTATGCACGAGGTGTATGGCGATGAATTTGAAGCCTTGTACACCAAGTACGAG 33849 Query 364081 TCGGAGGGAAAGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 || || |||| || | ||||| || ||||||||||| |||| || || | || Sbjct 33850 AAGGCCGGCAAGG-TCATGAAGACCATCAAGGCACAGAAGCTGTGGTACGCTATTCTCGA 33908 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 |||| | |||||| || | |||| ||| ||||||| || | |||||||||||||| Sbjct 33909 GGCGCAAACTGAGACGGGCAATCCCTTCATGCTGTACAAGGACGCCTGCAACCGCAAGTC 33968 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 |||||| || |||| ||||| || || |||||| | |||||||||||| | || || Sbjct 33969 GAACCAGAAGAACCTCGGTACCATCAAGTGCAGCAACTTGTGTACCGAGATTGTCGAGTA 34028 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT--T 364317 | | || ||||| ||| || || || || || || || || || | || | || | Sbjct 34029 CTCGGCACCCGATGAGGTGGCTGTCTGCAATCTCGCCTCCATTGCCTTGCCCACCTTCAT 34088 Query 364318 GTAAAAGATGGTA--------CTTTT--GACCACCAGCATCTTTATGACGTAACCTATCA 364367 | | | | | | | | ||| | || | || | || || || | Sbjct 34089 CGACATGCGCGCAGAAACACCCGTCTACGACTTCAAGAAGCTCCACGATGTCGCCAAGGT 34148 Query 364368 TGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGA 364427 || | || |||| | ||||| | |||||| || || || ||| | |||||| || Sbjct 34149 TGTTGCTCGCAACTTGAACAAGATCATCGACGTCAACTACTACCCAGTCATTGAAGCTGA 34208 Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487 |||||| || | |||||| || || || ||||||||||| || || ||||| || | || Sbjct 34209 GCGTTCCAACAAGCGTCACCGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTT 34268 Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 || || ||| || |||| || ||||| || || | || || | | ||||| Sbjct 34269 CTTGGCACTTAAGCTGCCATTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTT 34328 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAA 364607 ||| || || || | || | || |||||||| ||||| || |||| Sbjct 34329 TGAGACCATCTACCACGGTGCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCC 34388 Query 364608 GTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667 |||||||| || ||||| || ||| || |||||| || |||| ||| | ||||| Sbjct 34389 ATACTCTACCTACGAGGGCTCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGTGGAA 34448 Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCAT 364725 |||||| || | | ||| |||||| ||||| | | | | || |||||| Sbjct 34449 TGTCACACCCACCAAGCTCTGGGACTGGGCGACGCTCAAAGAGC--AGATTGCAAAGCAT 34506 Query 364726 GGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTC 364785 |||| ||||||||||| | || || |||||||| || || || ||||||| || Sbjct 34507 GGTATCCGCAACTCCCTGTTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTG 34566 Query 364786 GGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCC 364845 || ||| || ||||| || || | || ||||| |||| || || || || ||| || Sbjct 34567 GGTTTCAATGAATGCTTTGAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCC 34626 Query 364846 GGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGG 364905 || || || | ||| || || | | |||||||||| || || || ||| Sbjct 34627 GGTGAGTTCCAGGTGGTGAACCCTTGGTTGCTCAAGGATCTCGTTGAGATGGGACTCTGG 34686 Query 364906 GGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA 364965 || | |||||||| ||||| |||| | ||| |||||||| ||||| ||| Sbjct 34687 TCAGAGAATATGAAGAATCGCATCATTGCCGATGGTGGCTCTGTGCAAAACATCCCAAAC 34746 Query 364966 TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAACT-C 365023 | || | ||| ||| | | ||||| || |||||||| | || || || | Sbjct 34747 ATCCCTGCAGAGACGAAAGCCCTCTACAAGACTGTATGGGAGCTCTCTCA--AAAAGTGG 34804 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC--GT 365081 | || |||||||| || || || ||||| ||||| |||| || || | ||| | Sbjct 34805 TGATCGATATGGCTGCTGACCGTGGTGCCTTTATTGATCAGTCGCAATCCCTCAACTTGC 34864 Query 365082 AT-TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAAT 365140 || ||| | | ||| || | || || ||||||| ||||| || || || ||||| Sbjct 34865 ATCTCAAGGC---GCCGACATTCGGTAAAATTACATCGATGCACTTTTATGGTTGGAAGA 34921 Query 365141 CCGGTCTTAAGACAGG 365156 || || ||||| || Sbjct 34922 AGGGACTCAAGACGGG 34937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352865234408