Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq43 426 4e-114
>seq43
Length=605699
Score = 426 bits (472), Expect = 4e-114
Identities = 1162/1756 (66%), Gaps = 40/1756 (2%)
Strand=Plus/Plus
Query 363427 CGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGT 363486
|||||| |||||| | ||| || | |||||||| ||| | |||||||| ||| ||||
Sbjct 33196 CGTATCGATGGTGCTGTTGCAGAGAGACCGCAGCACATGATCATGCGTGTCGCTGTTGGC 33255
Query 363487 ATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA 363546
|| ||| | || |||| || ||||| ||||| || || | | | | | |
Sbjct 33256 ATTCATGGTGATGACATTGAAAAGGCCATTGAGACATACAACCTCATGTCTTC-CAAGCA 33314
Query 363547 -TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTC 363605
||||| ||||| |||| || | | ||| || || || | || ||||| | || ||
Sbjct 33315 CTTCACACACGCATCGCCTACCCTCTTCAACGCCGGTACGCCCAACCCACAACTCTCGTC 33374
Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665
|||||| ||| | | ||||||||| || || ||||| || |||| |||||||| || |
Sbjct 33375 TTGCTTCCTTGTCACAATGAAGGATGACTCGATCGATGGCATCTACGACACACTCAAAAC 33434
Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725
||||| | || || |||| || || || |||||| | ||||| | |||||
Sbjct 33435 GTGTGCCATGATCTCTAAGACAGCCGGTGGCATTGGTCTCAATGTCCACTGCATCCGTGC 33494
Query 363726 A-CAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783
| ||| |||||||||| ||| ||| || ||| || || || | | ||||||||
Sbjct 33495 AACAGG-CAGTTACATTGCCGGTACAAATGG-TACATCCAACGGCATCATCCCCATGCTG 33552
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843
||||| || |||| ||||| ||||| |||||||| ||||| ||||| ||| ||
Sbjct 33553 CGTGTCTTCAACAACACTGCCAGGTATGTCGACCAAGGTGGCAACAAGCGTCCAGGTGCC 33612
Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903
|||||||| || | ||||| || || || || |||| || ||||| | || ||
Sbjct 33613 TTTGCTATTTACATTGAGCCATGGCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAG 33672
Query 363904 AAC-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960
||| |||| || |||||| | || ||||| || |||||||||| || ||| | ||
Sbjct 33673 AACCACGGCAAGGAAGAGG---TCCGCGCACGCGACTTGTTCTATGCTCTCTGGATCCCT 33729
Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAA 364020
|| | || |||||||| ||||||| | | ||||| ||| | ||||| |||||
Sbjct 33730 GATCTCTTCATGAAGCGTGTGGAGGAGAATGGCGAGTGGTCGCTCATGTGCCCCAACGAA 33789
Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080
||||| ||| | ||| || | || || || | || || | ||| ||||| ||
Sbjct 33790 TGTCCTGGTATGCACGAGGTGTATGGCGATGAATTTGAAGCCTTGTACACCAAGTACGAG 33849
Query 364081 TCGGAGGGAAAGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139
|| || |||| || | ||||| || ||||||||||| |||| || || | ||
Sbjct 33850 AAGGCCGGCAAGG-TCATGAAGACCATCAAGGCACAGAAGCTGTGGTACGCTATTCTCGA 33908
Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199
|||| | |||||| || | |||| ||| ||||||| || | ||||||||||||||
Sbjct 33909 GGCGCAAACTGAGACGGGCAATCCCTTCATGCTGTACAAGGACGCCTGCAACCGCAAGTC 33968
Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259
|||||| || |||| ||||| || || |||||| | |||||||||||| | || ||
Sbjct 33969 GAACCAGAAGAACCTCGGTACCATCAAGTGCAGCAACTTGTGTACCGAGATTGTCGAGTA 34028
Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT--T 364317
| | || ||||| ||| || || || || || || || || || | || | || |
Sbjct 34029 CTCGGCACCCGATGAGGTGGCTGTCTGCAATCTCGCCTCCATTGCCTTGCCCACCTTCAT 34088
Query 364318 GTAAAAGATGGTA--------CTTTT--GACCACCAGCATCTTTATGACGTAACCTATCA 364367
| | | | | | | | ||| | || | || | || || || |
Sbjct 34089 CGACATGCGCGCAGAAACACCCGTCTACGACTTCAAGAAGCTCCACGATGTCGCCAAGGT 34148
Query 364368 TGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGA 364427
|| | || |||| | ||||| | |||||| || || || ||| | |||||| ||
Sbjct 34149 TGTTGCTCGCAACTTGAACAAGATCATCGACGTCAACTACTACCCAGTCATTGAAGCTGA 34208
Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487
|||||| || | |||||| || || || ||||||||||| || || ||||| || | ||
Sbjct 34209 GCGTTCCAACAAGCGTCACCGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTT 34268
Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547
|| || ||| || |||| || ||||| || || | || || | | |||||
Sbjct 34269 CTTGGCACTTAAGCTGCCATTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTT 34328
Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAA 364607
||| || || || | || | || |||||||| ||||| || ||||
Sbjct 34329 TGAGACCATCTACCACGGTGCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCC 34388
Query 364608 GTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667
|||||||| || ||||| || ||| || |||||| || |||| ||| | |||||
Sbjct 34389 ATACTCTACCTACGAGGGCTCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGTGGAA 34448
Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCAT 364725
|||||| || | | ||| |||||| ||||| | | | | || ||||||
Sbjct 34449 TGTCACACCCACCAAGCTCTGGGACTGGGCGACGCTCAAAGAGC--AGATTGCAAAGCAT 34506
Query 364726 GGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTC 364785
|||| ||||||||||| | || || |||||||| || || || ||||||| ||
Sbjct 34507 GGTATCCGCAACTCCCTGTTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTG 34566
Query 364786 GGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCC 364845
|| ||| || ||||| || || | || ||||| |||| || || || || ||| ||
Sbjct 34567 GGTTTCAATGAATGCTTTGAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCC 34626
Query 364846 GGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGG 364905
|| || || | ||| || || | | |||||||||| || || || |||
Sbjct 34627 GGTGAGTTCCAGGTGGTGAACCCTTGGTTGCTCAAGGATCTCGTTGAGATGGGACTCTGG 34686
Query 364906 GGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA 364965
|| | |||||||| ||||| |||| | ||| |||||||| ||||| |||
Sbjct 34687 TCAGAGAATATGAAGAATCGCATCATTGCCGATGGTGGCTCTGTGCAAAACATCCCAAAC 34746
Query 364966 TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAACT-C 365023
| || | ||| ||| | | ||||| || |||||||| | || || || |
Sbjct 34747 ATCCCTGCAGAGACGAAAGCCCTCTACAAGACTGTATGGGAGCTCTCTCA--AAAAGTGG 34804
Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC--GT 365081
| || |||||||| || || || ||||| ||||| |||| || || | ||| |
Sbjct 34805 TGATCGATATGGCTGCTGACCGTGGTGCCTTTATTGATCAGTCGCAATCCCTCAACTTGC 34864
Query 365082 AT-TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAAT 365140
|| ||| | | ||| || | || || ||||||| ||||| || || || |||||
Sbjct 34865 ATCTCAAGGC---GCCGACATTCGGTAAAATTACATCGATGCACTTTTATGGTTGGAAGA 34921
Query 365141 CCGGTCTTAAGACAGG 365156
|| || ||||| ||
Sbjct 34922 AGGGACTCAAGACGGG 34937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303352865234408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |