Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq40 125 7e-24 seq43 113 4e-20 >seq40 Length=667070 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| || | ||||| |||||| ||||||||||| Sbjct 1474 GTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 1415 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||||||||| || ||||| ||||| ||||| ||||||| |||| Sbjct 1414 GCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTG 1355 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | |||||||| |||| ||| | ||| || || || || || Sbjct 1354 ACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 1295 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 1294 TTGACGAAGATTTGCAT 1278 >seq43 Length=605699 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||| ||| || || | || |||||||| ||||||||||| ||| | Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || || |||| | |||||||||||| || || Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | ||||| | Sbjct 450544 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACC 450603 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || |||||||| ||||| Sbjct 450604 TCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | || |||||||| || |||||||| || | Sbjct 450880 CCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCC 450939 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || | || | |||||||||||| || ||| Sbjct 450940 AAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGG 450999 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | ||||| | Sbjct 451000 ATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACC 451059 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || | || || |||||||| ||||| Sbjct 451060 TCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | || |||||||| || || ||||| || Sbjct 450652 CCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCA 450711 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || | || | |||||||||||| || || Sbjct 450712 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGA 450771 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | || |||| Sbjct 450772 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACT 450831 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || || | ||| || |||||||||||||| Sbjct 450832 TCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | || |||||||| || |||||||| || Sbjct 451336 CCACCACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 451395 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||| || ||| | || ||||||||||||||||| || Sbjct 451396 AGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGA 451455 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||| | || | || || | ||| || | Sbjct 451456 ATCCCTTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACC 451515 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | ||||| ||| || || || || || || || || |||| Sbjct 451516 TCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCT 451558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| ||||| ||||| ||| | Sbjct 451108 CCACCACGGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCC 451167 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || | || | ||||||||| || || || Sbjct 451168 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGA 451227 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||| | Sbjct 451228 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACC 451287 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || || || |||||||| Sbjct 451288 TCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012540392960