Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq36 140 2e-28
seq30 140 2e-28
seq19 140 2e-28
>seq36
Length=3393
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2552 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2611
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2612 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2646
>seq30
Length=10296
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 8533 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8592
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 8593 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8627
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 584 CTCTCTTTTCAAAGTTCTTTTCATCTTTCGATCACTCTACTTGTTCGCTATCGGTCTCTG 643
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 644 GCCAATATTTAGCTTTA 660
>seq19
Length=179986
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 170337 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 170396
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 170397 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 170431
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 172684 CTCTCTTTTCAAAGTTCTTTTCATCTTTCGATCACTCTACTTGTTCGCTATCGGTCTCTG 172743
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 172744 GCCAATATTTAGCTTTA 172760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947020384564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |